RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 RCVRNP35243 200 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 AQP4P55087 323 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 ZXDBP98169 803 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 ANKDD1AQ495B1 522 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 CYP27C1Q4G0S4 372 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 TPRG1LQ5T0D9 272 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 GPALPP1Q8IXQ4 340 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 NAGSQ8N159 534 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 FAM86B1Q8N7N1 296 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 LRRC3BQ96PB8 259 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 DCUN1D5Q9BTE7 237 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 ABCD2Q9UBJ2 740 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 TNFRSF10DQ9UBN6 386 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 C19orf53Q9UNZ5 99 aaPredicted RBP6.47□□□□□ -1.37
SF3B1-201ENST00000335508 AGRPO00253 132 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 SCRG1O75711 98 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 AIFM1O95831 613 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 P04436 131 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 FOLR3P41439 243 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 PCDH1Q08174 1060 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 PTPRRQ15256 657 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 TMEM31Q5JXX7 168 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 FRMPD2BQ6IN97 320 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF761Q86XN6 746 aaPredicted RBP6.47□□□□□ -1.37
SF3B1-201ENST00000335508 OR4N5Q8IXE1 308 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 CMIPQ8IY22 773 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 PELI3Q8N2H9 469 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 OR2T4Q8NH00 348 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 SGCZQ96LD1 299 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 EBF1Q9UH73 591 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 CDK5RAP2Q96SN8 1893 aa6.47□□□□□ -1.37
SF3B1-201ENST00000335508 DAPL1A0PJW8 107 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 EFCAB7A8K855 629 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 ACOT7O00154 380 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 SNX4O95219 450 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 MC3RP41968 323 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 MRPL19P49406 292 aaKnown RBP6.46□□□□□ -1.37
SF3B1-201ENST00000335508 HLCSP50747 726 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 CXCR4P61073 352 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 DCDP81605 110 aaKnown RBP6.46□□□□□ -1.37
SF3B1-201ENST00000335508 CCSMST1Q4G0I0 132 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 ALG10BQ5I7T1 473 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 C6orf141Q5SZD1 244 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 GDPGP1Q6ZNW5 385 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 ACBD7Q8N6N7 88 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 OR9A4Q8NGU2 314 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 DIO2Q92813 273 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 ZPBPQ9BS86 351 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 HCN2Q9UL51 889 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 C17orf105B2RV13 164 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 K7ESM1 405 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 PLPP1O14494 284 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 KCNK5O95279 499 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 CYP4B1P13584 511 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 POU2F1P14859 743 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF3P17036 446 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 EPHA8P29322 1005 aaPredicted RBP6.46□□□□□ -1.37
SF3B1-201ENST00000335508 GIPRP48546 466 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 C18orf21Q32NC0 220 aaPredicted RBP6.46□□□□□ -1.37
SF3B1-201ENST00000335508 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.46□□□□□ -1.37
SF3B1-201ENST00000335508 ARHGAP11AQ6P4F7 1023 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 SLC43A2Q8N370 569 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 MCFD2Q8NI22 146 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 COQ7Q99807 217 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 BTBD2Q9BX70 525 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 PINK1Q9BXM7 581 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 TUBA8Q9NY65 449 aaPredicted RBP6.46□□□□□ -1.37
SF3B1-201ENST00000335508 SPHK1Q9NYA1 384 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 PPP4R1LQ9P1A2 415 aa6.46□□□□□ -1.37
SF3B1-201ENST00000335508 USP9YO00507 2555 aaPredicted RBP6.46□□□□□ -1.38
SF3B1-201ENST00000335508 C2orf92A0A1B0GVN3 265 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 SH3PXD2BA1X283 911 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 SH3D21A4FU49 640 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 LRIT2A6NDA9 550 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 HAT1O14929 419 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 NADKO95544 446 aaPredicted RBP6.46□□□□□ -1.38
SF3B1-201ENST00000335508 FESP07332 822 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 F8A1P23610 371 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 PSMB5P28074 263 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 EMP3P54852 163 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 MS4A2Q01362 244 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 RASGEF1BQ0VAM2 473 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 LPAL2Q16609 132 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 BTBD16Q32M84 506 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 SLC36A3Q495N2 470 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 CMPK2Q5EBM0 449 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 IER5LQ5T953 404 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 ULK3Q6PHR2 472 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 TP53I13Q8NBR0 393 aaPredicted RBP6.46□□□□□ -1.38
SF3B1-201ENST00000335508 PMEPA1Q969W9 287 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 NMD3Q96D46 503 aaKnown RBP6.46□□□□□ -1.38
SF3B1-201ENST00000335508 OR51V1Q9H2C8 321 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 PISDQ9UG56 409 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 TESQ9UGI8 421 aaKnown RBP6.46□□□□□ -1.38
SF3B1-201ENST00000335508 ACSL6Q9UKU0 697 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 NSG1A0A0A6YYJ2 146 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 H3BUI4 141 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 PDLIM1O00151 329 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 MAGEB3O15480 346 aa6.46□□□□□ -1.38
SF3B1-201ENST00000335508 RPLP0P05388 317 aaKnown RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms