RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 REM1O75628 298 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 UNC5CO95185 931 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 IFI6P09912 130 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 KIR3DL1P43629 444 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 DGKQP52824 942 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 PPIAP62937 165 aaKnown RBP12.27□□□□□ -0.45
VPS28-201ENST00000292510 KCNJ2P63252 427 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 HBA1P69905 142 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 HSF1Q00613 529 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 FOXO1Q12778 655 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 GAB1Q13480 694 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 FAM174BQ3ZCQ3 159 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 GFRALQ6UXV0 394 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 RGS9BPQ6ZS82 235 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 GK5Q6ZS86 529 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 ANKRD46Q86W74 232 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 CLEC4FQ8N1N0 589 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 POGLUT1Q8NBL1 392 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 OR8J2Q8NGG1 315 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 OR52N2Q8NGI0 321 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 OR5AK3PQ8NH89 298 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 PRR7Q8TB68 274 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 PIK3R3Q92569 461 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 TESCQ96BS2 214 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 EFHD2Q96C19 240 aaPredicted RBP12.27□□□□□ -0.45
VPS28-201ENST00000292510 C16orf58Q96GQ5 468 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 GPR137Q96N19 417 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 ADOQ96SZ5 270 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 LMF2Q9BU23 707 aaKnown RBP12.27□□□□□ -0.45
VPS28-201ENST00000292510 TTTY12Q9BZ98 90 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 C3orf14Q9HBI5 128 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 MED4Q9NPJ6 270 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 ZCCHC3Q9NUD5 404 aaKnown RBP12.27□□□□□ -0.45
VPS28-201ENST00000292510 CNIH4Q9P003 139 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 NTMQ9P121 344 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 SEC14L3Q9UDX4 400 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 MAPRE3Q9UPY8 281 aa12.27□□□□□ -0.45
VPS28-201ENST00000292510 USP9XQ93008 2570 aaPredicted RBP12.26□□□□□ -0.45
VPS28-201ENST00000292510 ESPL1Q14674 2120 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 POLEQ07864 2286 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 COL12A1Q99715 3063 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 LRRK2Q5S007 2527 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 UBDO15205 165 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 ATP8B1O43520 1251 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 TSPAN2O60636 221 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 EDF1O60869 148 aaKnown RBP12.26□□□□□ -0.45
VPS28-201ENST00000292510 SCN2BO60939 215 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 GLSO94925 669 aaPredicted RBP12.26□□□□□ -0.45
VPS28-201ENST00000292510 TGDSO95455 350 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 CPSF4O95639 269 aaKnown RBP12.26□□□□□ -0.45
VPS28-201ENST00000292510 ACP2P11117 423 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 NAGAP17050 411 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 GABRA3P34903 492 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 SOAT1P35610 550 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 CASP3P42574 277 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 RFX3P48380 749 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 CCT3P49368 545 aaKnown RBP12.26□□□□□ -0.45
VPS28-201ENST00000292510 CLNS1AP54105 237 aaKnown RBP12.26□□□□□ -0.45
VPS28-201ENST00000292510 TP53BP2Q13625 1128 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 ELOAQ14241 798 aaKnown RBP12.26□□□□□ -0.45
VPS28-201ENST00000292510 ZNHIT3Q15649 155 aaPredicted RBP12.26□□□□□ -0.45
VPS28-201ENST00000292510 SPDYE7PQ495Y7 208 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 ACAD11Q709F0 780 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 NUP54Q7Z3B4 507 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 NATD1Q8N6N6 113 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 SLC16A11Q8NCK7 471 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 PSMA8Q8TAA3 256 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 SLC9A6Q92581 669 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 JSRP1Q96MG2 331 aaPredicted RBP12.26□□□□□ -0.45
VPS28-201ENST00000292510 RILPQ96NA2 401 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 COL21A1Q96P44 957 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 MS4A4EQ96PG1 132 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 DOHHQ9BU89 302 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 DEFB127Q9H1M4 99 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 METTL7AQ9H8H3 244 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 IL1RL2Q9HB29 575 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 TCF7L2Q9NQB0 619 aa12.26□□□□□ -0.45
VPS28-201ENST00000292510 RYDENQ9NUL5 291 aaKnown RBP12.26□□□□□ -0.45
VPS28-201ENST00000292510 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.26□□□□□ -0.45
VPS28-201ENST00000292510 EXPH5Q8NEV8 1989 aa12.25□□□□□ -0.45
VPS28-201ENST00000292510 C2orf72A6NCS6 295 aa12.25□□□□□ -0.45
VPS28-201ENST00000292510 OR6C70A6NIJ9 312 aa12.25□□□□□ -0.45
VPS28-201ENST00000292510 LRRC3CA6NJW4 275 aa12.25□□□□□ -0.45
VPS28-201ENST00000292510 RNASET2O00584 256 aaKnown RBP12.25□□□□□ -0.45
VPS28-201ENST00000292510 POLR3GO15318 223 aaPredicted RBP12.25□□□□□ -0.45
VPS28-201ENST00000292510 ASNA1O43681 348 aa12.25□□□□□ -0.45
VPS28-201ENST00000292510 CDC40O60508 579 aaKnown RBP eCLIP12.25□□□□□ -0.45
VPS28-201ENST00000292510 PDE9AO76083 593 aa12.25□□□□□ -0.45
VPS28-201ENST00000292510 NKX2-2O95096 273 aa12.25□□□□□ -0.45
VPS28-201ENST00000292510 ZIC2O95409 532 aaPredicted RBP12.25□□□□□ -0.45
VPS28-201ENST00000292510 HMGN2P05204 90 aaKnown RBP12.25□□□□□ -0.45
VPS28-201ENST00000292510 CELA3AP09093 270 aa12.25□□□□□ -0.45
VPS28-201ENST00000292510 RFPL3SP0C7P2 107 aa12.25□□□□□ -0.45
VPS28-201ENST00000292510 CYP4B1P13584 511 aa12.25□□□□□ -0.45
VPS28-201ENST00000292510 IDO1P14902 403 aa12.25□□□□□ -0.45
VPS28-201ENST00000292510 IL12BP29460 328 aa12.25□□□□□ -0.45
VPS28-201ENST00000292510 S100A3P33764 101 aa12.25□□□□□ -0.45
VPS28-201ENST00000292510 KRT20P35900 424 aa12.25□□□□□ -0.45
VPS28-201ENST00000292510 PTGDSP41222 190 aa12.25□□□□□ -0.45
VPS28-201ENST00000292510 MAP3K8P41279 467 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms