RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CARNS1A5YM72 827 aa15.62■□□□□ 0.09
VPS54-201ENST00000272322 FAAHO00519 579 aa15.62■□□□□ 0.09
VPS54-201ENST00000272322 RUNX1T1Q06455 604 aa15.62■□□□□ 0.09
VPS54-201ENST00000272322 PCDH1Q08174 1060 aa15.62■□□□□ 0.09
VPS54-201ENST00000272322 KLHL12Q53G59 568 aa15.62■□□□□ 0.09
VPS54-201ENST00000272322 TRMT12Q53H54 448 aaKnown RBP15.62■□□□□ 0.09
VPS54-201ENST00000272322 NRARPQ7Z6K4 114 aa15.62■□□□□ 0.09
VPS54-201ENST00000272322 HCAR2Q8TDS4 363 aa15.62■□□□□ 0.09
VPS54-201ENST00000272322 TMEM255BQ8WV15 326 aa15.62■□□□□ 0.09
VPS54-201ENST00000272322 MMP28Q9H239 520 aa15.62■□□□□ 0.09
VPS54-201ENST00000272322 SIAEQ9HAT2 523 aa15.62■□□□□ 0.09
VPS54-201ENST00000272322 PELI2Q9HAT8 420 aa15.62■□□□□ 0.09
VPS54-201ENST00000272322 DDX28Q9NUL7 540 aaKnown RBP15.62■□□□□ 0.09
VPS54-201ENST00000272322 SERPINI2O75830 405 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 PRG2P13727 222 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 ACSL1P33121 698 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 CSTF2P33240 577 aaKnown RBP eCLIP15.61■□□□□ 0.093e-9■■■■□ 26.4
VPS54-201ENST00000272322 HYAL2Q12891 473 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 RPA4Q13156 261 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 IRF3Q14653 427 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 PLEKHM3Q6ZWE6 761 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 HDAC8Q9BY41 377 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 ACSL5Q9ULC5 683 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 SEMA3DO95025 777 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 MYL12AP19105 171 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 LBX1P52954 281 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 RPS25P62851 125 aaKnown RBP15.61■□□□□ 0.09
VPS54-201ENST00000272322 SELENBP1Q13228 472 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 C1orf61Q13536 156 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 C1DQ13901 141 aaKnown RBP15.61■□□□□ 0.09
VPS54-201ENST00000272322 BAK1Q16611 211 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 ARMC4Q5T2S8 1044 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 NXNL2Q5VZ03 156 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 ZNF367Q7RTV3 350 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 OR52I1Q8NGK6 324 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 BBS10Q8TAM1 723 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 TEX47Q8TBZ9 253 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 RNFT2Q96EX2 444 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 APOOQ9BUR5 198 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 PRRG3Q9BZD7 231 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 BTBD1Q9H0C5 482 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 SRMSQ9H3Y6 488 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 CLEC4AQ9UMR7 237 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 BOLA1Q9Y3E2 137 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 RPL36Q9Y3U8 105 aaKnown RBP15.61■□□□□ 0.09
VPS54-201ENST00000272322 KIAA1671Q9BY89 1806 aa15.61■□□□□ 0.09
VPS54-201ENST00000272322 ASXL3Q9C0F0 2248 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 LOC105369274A0A096LPK9 316 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 LOC102723532A0A0G2JNH3 316 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 CACNB4O00305 520 aaPredicted RBP15.6■□□□□ 0.09
VPS54-201ENST00000272322 TYRP1P17643 537 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 CELP19835 753 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 FCARP24071 287 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 FAM131AQ6UXB0 335 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 OR4N4Q8N0Y3 316 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 OR7G2Q8NG99 324 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 OR1E3Q8WZA6 343 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 TM9SF4Q92544 642 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 ABHD8Q96I13 439 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 SLC30A2Q9BRI3 323 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 FKBP14Q9NWM8 211 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 KLHL3Q9UH77 587 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 SSR3Q9UNL2 185 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 YBX2Q9Y2T7 364 aaKnown RBP15.6■□□□□ 0.09
VPS54-201ENST00000272322 ASB4Q9Y574 426 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 CXorf51AA0A1B0GTR3 108 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 CPN2P22792 545 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 MPIP34949 423 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 AHRP35869 848 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 HNRNPFP52597 415 aaKnown RBP15.6■□□□□ 0.09
VPS54-201ENST00000272322 ATAD3BQ5T9A4 648 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 AMIGO1Q86WK6 493 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 DIRAS2Q96HU8 199 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 DCLRE1CQ96SD1 692 aaKnown RBP15.6■□□□□ 0.09
VPS54-201ENST00000272322 KCND3Q9UK17 655 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 MRPS2Q9Y399 296 aaKnown RBP15.6■□□□□ 0.09
VPS54-201ENST00000272322 GPC6Q9Y625 555 aaPredicted RBP15.6■□□□□ 0.09
VPS54-201ENST00000272322 EPOPA6NHQ4 379 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 MRPL3P09001 348 aaKnown RBP15.6■□□□□ 0.09
VPS54-201ENST00000272322 PCSK2P16519 638 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 SLC15A1P46059 708 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 ERVK-21P61565 698 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 RPS7P62081 194 aaKnown RBP15.6■□□□□ 0.09
VPS54-201ENST00000272322 EXOSC7Q15024 291 aaKnown RBP15.6■□□□□ 0.09
VPS54-201ENST00000272322 FBXO43Q4G163 708 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 TMEM196Q5HYL7 178 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 RSBN1Q5VWQ0 802 aaPredicted RBP15.6■□□□□ 0.09
VPS54-201ENST00000272322 SLX4IPQ5VYV7 408 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 TRIM48Q8IWZ4 208 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 PHC2Q8IXK0 858 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 CRELD1Q96HD1 420 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 ZNF582Q96NG8 517 aaPredicted RBP15.6■□□□□ 0.09
VPS54-201ENST00000272322 MCHR1Q99705 422 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 TEX101Q9BY14 249 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 GIMAP4Q9NUV9 329 aa15.6■□□□□ 0.09
VPS54-201ENST00000272322 URB1O60287 2271 aaKnown RBP15.6■□□□□ 0.09
VPS54-201ENST00000272322 PTPRSQ13332 1948 aa15.59■□□□□ 0.09
VPS54-201ENST00000272322 CLEC3AO75596 197 aa15.59■□□□□ 0.09
VPS54-201ENST00000272322 COL9A1P20849 921 aa15.59■□□□□ 0.09
VPS54-201ENST00000272322 KHKP50053 298 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms