RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 SLC25A36Q96CQ1 311 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 COX14Q96I36 57 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 CXorf56Q9H5V9 222 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 TCF7L1Q9HCS4 588 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 POMT2Q9UKY4 750 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 UBE2QL1A1L167 161 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 GATBO75879 557 aaKnown RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 GBAP04062 536 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 CAPN3P20807 821 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 DLX2Q07687 328 aaPredicted RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 MLC1Q15049 377 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 PELI3Q8N2H9 469 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 SLC37A2Q8TED4 501 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 RLN3Q8WXF3 142 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 PMEPA1Q969W9 287 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 RNF13O43567 381 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 PNLIPP16233 465 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 ACSL1P33121 698 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 CTBP2P56545 445 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 MZT1Q08AG7 82 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 OGFRL1Q5TC84 451 aaPredicted RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 ANKRD26P1Q6NSI1 321 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 C6orf15Q6UXA7 325 aaPredicted RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 AHSA2Q719I0 299 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 IFI44Q8TCB0 444 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 KAT2AQ92830 837 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 BORCS5Q969J3 196 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 C1GALT1C1Q96EU7 318 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 LRFN5Q96NI6 719 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 MRI1Q9BV20 369 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 TRAPPC6AO75865 159 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 CD82P27701 267 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 OTX2P32243 289 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 MAZP56270 477 aaKnown RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 POMZP3Q6PJE2 187 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 CCDC103Q8IW40 242 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 ZNF548Q8NEK5 533 aaPredicted RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 PJA1Q8NG27 643 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 UCN3Q969E3 161 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 COQ7Q99807 217 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 PKP2Q99959 881 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 DUSP15Q9H1R2 295 aaPredicted RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 LOC100506127A0A0U1RQW1 187 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 SGK494L7N484 410 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 RRP8O43159 456 aaKnown RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 TRHRP34981 398 aaPredicted RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 AQP4P55087 323 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 ATP1A4Q13733 1029 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 C6orf52Q5T4I8 152 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 UBAP2Q5T6F2 1119 aaKnown RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 C3P1Q6ZMU1 363 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 PPP1R14AQ96A00 147 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 PDXPQ96GD0 296 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 SLC6A16Q9GZN6 736 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 CUEDC1Q9NWM3 386 aaPredicted RBP12.86□□□□□ -0.35
LDLR-201ENST00000252444 SARDHQ9UL12 918 aa12.86□□□□□ -0.35
LDLR-201ENST00000252444 GLOD5A6NK44 160 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 OSMP13725 252 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 MNDAP41218 407 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 PCYT1AP49585 367 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 HSF2Q03933 536 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 MICAQ29983 383 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 DTWD2Q8NBA8 298 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 ADAMTS19Q8TE59 1207 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 ADAD1Q96M93 576 aaKnown RBP12.85□□□□□ -0.35
LDLR-201ENST00000252444 PADI1Q9ULC6 663 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 NOX1Q9Y5S8 564 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 FAM149AA5PLN7 773 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 PDLIM1O00151 329 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 GJB3O75712 270 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 NDUFB2O95178 105 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 ITGAMP11215 1152 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 CD72P21854 359 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 DGCR6Q14129 220 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 CDKN3Q16667 212 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 BTBD16Q32M84 506 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 ZBED5Q49AG3 693 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 ZNF57Q68EA5 555 aaPredicted RBP12.85□□□□□ -0.35
LDLR-201ENST00000252444 CAMKMTQ7Z624 323 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 FTMTQ8N4E7 242 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 TMEM178AQ8NBL3 297 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 ATP6V1C2Q8NEY4 427 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 RAB8BQ92930 207 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 SCGB3A2Q96PL1 93 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 TTYH2Q9BSA4 534 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 CCDC187A0A096LP49 1063 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 AIREO43918 545 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 TSPYL5Q86VY4 417 aaPredicted RBP12.85□□□□□ -0.35
LDLR-201ENST00000252444 OR9A2Q8NGT5 310 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 DIO2Q92813 273 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 CCDC74AQ96AQ1 378 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 NMD3Q96D46 503 aaKnown RBP12.85□□□□□ -0.35
LDLR-201ENST00000252444 DUSP22Q9NRW4 184 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 FGF21Q9NSA1 209 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 ICKQ9UPZ9 632 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 DENRO43583 198 aaKnown RBP12.85□□□□□ -0.35
LDLR-201ENST00000252444 OPN1SWP03999 348 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 IGFBP6P24592 240 aaPredicted RBP12.85□□□□□ -0.35
LDLR-201ENST00000252444 SSR4P51571 173 aa12.85□□□□□ -0.35
LDLR-201ENST00000252444 BLMHQ13867 455 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms