RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 DLX4Q92988 240 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 PTP4A1Q93096 173 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 IL22RA2Q969J5 263 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 C18orf25Q96B23 403 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 ELSPBP1Q96BH3 223 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ULK4Q96C45 1275 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 AP2M1Q96CW1 435 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 RAB39BQ96DA2 213 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ZNF274Q96GC6 653 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 C16orf74Q96GX8 76 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 RBM18Q96H35 190 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 CDKN2AIPNLQ96HQ2 116 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 CXorf58Q96LI9 332 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 C9orf85Q96MD7 179 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 GPR137Q96N19 417 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ZMAT2Q96NC0 199 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 ANKRD27Q96NW4 1050 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 OR4F4Q96R69 305 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SPAG8Q99932 426 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 CITED2Q99967 270 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 MAPKAP1Q9BPZ7 522 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 FERMT1Q9BQL6 677 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 THUMPD3Q9BV44 507 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 UTP14AQ9BVJ6 771 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 IDI2Q9BXS1 227 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 MRPL9Q9BYD2 267 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 OSBPL8Q9BZF1 889 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 TRIM9Q9C026 710 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 NMUR2Q9GZQ4 415 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SLC26A1Q9H2B4 701 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 GANQ9H2C0 597 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 OR51J1Q9H342 316 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 TSPY26PQ9H489 355 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 TMEM206Q9H813 350 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 DCLRE1BQ9H816 532 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 MAGEF1Q9HAY2 307 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ZCCHC17Q9NP64 241 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 NRN1Q9NPD7 142 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ESM1Q9NQ30 184 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 TIGARQ9NQ88 270 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 HPS4Q9NQG7 708 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 PFDN4Q9NQP4 134 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 EXOSC3Q9NQT5 275 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 GDF3Q9NR23 364 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 CENPMQ9NSP4 180 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 DDX28Q9NUL7 540 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 ACOXLQ9NUZ1 547 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 SPG21Q9NZD8 308 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 ONECUT1Q9UBC0 465 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 EIF3KQ9UBQ5 218 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 SEC14L4Q9UDX3 406 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 PRODH2Q9UF12 536 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 TUBGCP4Q9UGJ1 667 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 NARFQ9UHQ1 456 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 KLHL21Q9UJP4 597 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 LEF1Q9UJU2 399 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 GMEB2Q9UKD1 530 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 MRTO4Q9UKD2 239 aaKnown RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 CCPG1Q9ULG6 757 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 NEU3Q9UQ49 428 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 WIF1Q9Y5W5 379 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 FLVCR1Q9Y5Y0 555 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 TEX264Q9Y6I9 313 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 LRRK1Q38SD2 2015 aa0.24□□□□□ -2.37
VPS35-212ENST00000640313 COL5A1P20908 1838 aaPredicted RBP0.24□□□□□ -2.37
VPS35-212ENST00000640313 FGD5Q6ZNL6 1462 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ARHGAP23Q9P227 1491 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 PTCH1Q13635 1447 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 PTPRUQ92729 1446 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 AFF2P51816 1311 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 KIF7Q2M1P5 1343 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 IGHV1OR15-1A0A075B7D0 117 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 NPIPA5A0A0B4J1W7 369 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 A0A0U1RRA0 63 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 C13orf42A0A1B0GVH6 325 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ESYT2A0FGR8 921 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ZNF320A2RRD8 509 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 TMEM89A2RUT3 159 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 SMIM30A4D0T7 59 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 PSMB11A5LHX3 300 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 RNF222A6NCQ9 220 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 LRIT2A6NDA9 550 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 TRABD2BA6NFA1 517 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ZSCAN5BA6NJL1 495 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 YJEFN3A6XGL0 299 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 EFCAB7A8K855 629 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ZNF705EA8MWA4 302 aaPredicted RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 NPIPA5E9PKD4 350 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 G3V3Y1 287 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 TLR4O00206 839 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 EEF2KO00418 725 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 IMPA2O14732 288 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 ARPC1BO15143 372 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 ADAM12O43184 909 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 BUB1O43683 1085 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 TYROBPO43914 113 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 EFNA2O43921 213 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 LCMT2O60294 686 aaKnown RBP0.23□□□□□ -2.37
VPS35-212ENST00000640313 SDC3O75056 442 aa0.23□□□□□ -2.37
VPS35-212ENST00000640313 NPIPB7O75200 414 aa0.23□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms