RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SLC15A4Q8N697 577 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 TMEM178AQ8NBL3 297 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 MDS2Q8NDY4 140 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 C17orf47Q8NEP4 570 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 VPS37AQ8NEZ2 397 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 OR8J2Q8NGG1 315 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 OR5P2Q8WZ92 322 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 ADIPOR1Q96A54 375 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 C3orf14Q9HBI5 128 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 NEUROD4Q9HD90 331 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 TIMMDC1Q9NPL8 285 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 EQTNQ9NQ60 294 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 ASF1BQ9NVP2 202 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 PCDHGB4Q9UN71 923 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 PCDHGA10Q9Y5H3 936 aa16.7■□□□□ 0.26
CLN3-239ENST00000628023 CAPN14A8MX76 684 aa16.69■□□□□ 0.26
CLN3-239ENST00000628023 UPK1AO00322 258 aa16.69■□□□□ 0.26
CLN3-239ENST00000628023 NME6O75414 186 aaPredicted RBP16.69■□□□□ 0.26
CLN3-239ENST00000628023 ERN1O75460 977 aaKnown RBP16.69■□□□□ 0.26
CLN3-239ENST00000628023 SLC22A3O75751 556 aa16.69■□□□□ 0.26
CLN3-239ENST00000628023 NEURL1O76050 574 aa16.69■□□□□ 0.26
CLN3-239ENST00000628023 IFI6P09912 130 aa16.69■□□□□ 0.26
CLN3-239ENST00000628023 TMED10P49755 219 aaKnown RBP16.69■□□□□ 0.26
CLN3-239ENST00000628023 ZNHIT3Q15649 155 aaPredicted RBP16.69■□□□□ 0.26
CLN3-239ENST00000628023 ZNF441Q8N8Z8 693 aa16.69■□□□□ 0.26
CLN3-239ENST00000628023 GLB1L3Q8NCI6 653 aaPredicted RBP16.69■□□□□ 0.26
CLN3-239ENST00000628023 FAM13CQ8NE31 585 aa16.69■□□□□ 0.26
CLN3-239ENST00000628023 SPACA9Q96E40 222 aaPredicted RBP16.69■□□□□ 0.26
CLN3-239ENST00000628023 LCORQ96JN0 433 aaPredicted RBP16.69■□□□□ 0.26
CLN3-239ENST00000628023 TEX37Q96LM6 180 aa16.69■□□□□ 0.26
CLN3-239ENST00000628023 MS4A4EQ96PG1 132 aa16.69■□□□□ 0.26
CLN3-239ENST00000628023 HES7Q9BYE0 225 aa16.69■□□□□ 0.26
CLN3-239ENST00000628023 NXF5Q9H1B4 397 aaKnown RBP16.69■□□□□ 0.26
CLN3-239ENST00000628023 TRIM45Q9H8W5 580 aaPredicted RBP16.69■□□□□ 0.26
CLN3-239ENST00000628023 SDR39U1Q9NRG7 319 aaPredicted RBP16.69■□□□□ 0.26
CLN3-239ENST00000628023 AGPAT4Q9NRZ5 378 aa16.69■□□□□ 0.26
CLN3-239ENST00000628023 RYDENQ9NUL5 291 aaKnown RBP16.69■□□□□ 0.26
CLN3-239ENST00000628023 ZIM2Q9NZV7 527 aa16.69■□□□□ 0.26
CLN3-239ENST00000628023 TRIM33Q9UPN9 1127 aa16.69■□□□□ 0.26
CLN3-239ENST00000628023 NOTCH2Q04721 2471 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 FRG2CA6NGY1 282 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 RNASET2O00584 256 aaKnown RBP16.68■□□□□ 0.26
CLN3-239ENST00000628023 ACOX3O15254 700 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 EMC8O43402 210 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 ZNF354AO60765 605 aaPredicted RBP16.68■□□□□ 0.26
CLN3-239ENST00000628023 CBX6O95503 412 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 NADKO95544 446 aaPredicted RBP16.68■□□□□ 0.26
CLN3-239ENST00000628023 FBXO45P0C2W1 286 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 PLCXD2Q0VAA5 305 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 SF3A3Q12874 501 aaKnown RBP eCLIP16.68■□□□□ 0.26
CLN3-239ENST00000628023 SLC25A25Q6KCM7 469 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 TMEM64Q6YI46 380 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 RTL4Q6ZR62 310 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 ANKRD46Q86W74 232 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 DND1Q8IYX4 353 aaKnown RBP16.68■□□□□ 0.26
CLN3-239ENST00000628023 PRR22Q8IZ63 422 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 CLECL1Q8IZS7 167 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 FAM98AQ8NCA5 519 aaKnown RBP16.68■□□□□ 0.26
CLN3-239ENST00000628023 NUP43Q8NFH3 380 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 OR4A15Q8NGL6 344 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 OR5M3Q8NGP4 307 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 HSPBAP1Q96EW2 488 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 VSTM2LQ96N03 204 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 BTBD9Q96Q07 612 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 ZCCHC3Q9NUD5 404 aaKnown RBP16.68■□□□□ 0.26
CLN3-239ENST00000628023 FAM120CQ9NX05 1096 aaKnown RBP16.68■□□□□ 0.26
CLN3-239ENST00000628023 KLF13Q9Y2Y9 288 aaPredicted RBP16.68■□□□□ 0.26
CLN3-239ENST00000628023 OR10H1Q9Y4A9 318 aa16.68■□□□□ 0.26
CLN3-239ENST00000628023 HIVEP3Q5T1R4 2406 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 SPENQ96T58 3664 aaKnown RBP16.67■□□□□ 0.26
CLN3-239ENST00000628023 ANKUB1A6NFN9 424 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 RASAL1O95294 804 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 PGRP06401 933 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 SP1P08047 785 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 NCF2P19878 526 aaPredicted RBP16.67■□□□□ 0.26
CLN3-239ENST00000628023 DRD5P21918 477 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 IL12AP29459 219 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 KRT20P35900 424 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 PPICP45877 212 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 DGKQP52824 942 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 CORO7P57737 925 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 TP53BP2Q13625 1128 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 INAQ16352 499 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 PAOXQ6QHF9 649 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 FAM180AQ6UWF9 173 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 GALNTL5Q7Z4T8 443 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 SLC44A2Q8IWA5 706 aaPredicted RBP16.67■□□□□ 0.26
CLN3-239ENST00000628023 GOLM1Q8NBJ4 401 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 PSD4Q8NDX1 1056 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 OR56A1Q8NGH5 318 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 STON2Q8WXE9 905 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 FAM120BQ96EK7 910 aaKnown RBP16.67■□□□□ 0.26
CLN3-239ENST00000628023 CHMP6Q96FZ7 201 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 SCMH1Q96GD3 660 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 SGCZQ96LD1 299 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 OR52E6Q96RD3 313 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 TMEM120AQ9BXJ8 343 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 CXorf36Q9H7Y0 433 aa16.67■□□□□ 0.26
CLN3-239ENST00000628023 SIRT3Q9NTG7 399 aaPredicted RBP16.67■□□□□ 0.26
CLN3-239ENST00000628023 GPR55Q9Y2T6 319 aaPredicted RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms