RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 A0A0G2JND7 137 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 PRSS51A0A1B0GVH4 220 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 TO15178 435 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 CFLARO15519 480 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 EMC8O43402 210 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 ABCB1P08183 1280 aaPredicted RBP15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 S100A3P33764 101 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 MRPL19P49406 292 aaKnown RBP15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 DGKQP52824 942 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 PSG6Q00889 435 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 TLE1Q04724 770 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 ZNF155Q12901 538 aaPredicted RBP15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 INAQ16352 499 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 NTRK2Q16620 822 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 ANXA8L1Q5VT79 327 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 CGB2Q6NT52 195 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 NPSR1Q6W5P4 371 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 DND1Q8IYX4 353 aaKnown RBP15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 PRR22Q8IZ63 422 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 MIER2Q8N344 545 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 PSD4Q8NDX1 1056 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 NUP43Q8NFH3 380 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 GIMAP5Q96F15 307 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 ZNF317Q96PQ6 595 aaPredicted RBP15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 TAAR6Q96RI8 345 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 TRIM4Q9C037 500 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 SH2D2AQ9NP31 389 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 MAP10Q9P2G4 905 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 NTNG1Q9Y2I2 539 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 SNX8Q9Y5X2 465 aa15.25■□□□□ 0.03
CCDC28A-202ENST00000611852 PRRC2CQ9Y520 2896 aaKnown RBP15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 PGRP06401 933 aa15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 TROVE2P10155 538 aaKnown RBP eCLIP15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 ZFP36L2P47974 494 aaKnown RBP15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 PRKAG1P54619 331 aa15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 PRR5P85299 388 aa15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 PAOXQ6QHF9 649 aa15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 SZRD1Q7Z422 152 aa15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 WDR53Q7Z5U6 358 aaPredicted RBP15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 ZNF605Q86T29 641 aa15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 ANKRD46Q86W74 232 aa15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 SLC44A2Q8IWA5 706 aaPredicted RBP15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 VPS37AQ8NEZ2 397 aa15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 OR9I1Q8NGQ6 314 aa15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 CPT1CQ8TCG5 803 aa15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 HOXB13Q92826 284 aaPredicted RBP15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 MS4A4EQ96PG1 132 aa15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 EQTNQ9NQ60 294 aa15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 ZCCHC3Q9NUD5 404 aaKnown RBP15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 FAM120CQ9NX05 1096 aaKnown RBP15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 KLF13Q9Y2Y9 288 aaPredicted RBP15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 COPG1Q9Y678 874 aaKnown RBP15.24■□□□□ 0.03
CCDC28A-202ENST00000611852 CAPN14A8MX76 684 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 RASAL1O95294 804 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 IL6P05231 212 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 CCL3P10147 92 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 NAGAP17050 411 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 CCT3P49368 545 aaKnown RBP15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 TMED10P49755 219 aaKnown RBP15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 FBXW4P57775 412 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 STX1BP61266 288 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 PLCXD2Q0VAA5 305 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 FAM13CQ8NE31 585 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 OR10G3Q8NGC4 313 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 OR4N2Q8NGD1 307 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 OR5M3Q8NGP4 307 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 PAQR8Q8TEZ7 354 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 RILPQ96NA2 401 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 OR52E6Q96RD3 313 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 BARD1Q99728 777 aaKnown RBP15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 LMF2Q9BU23 707 aaKnown RBP15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 TMEM120AQ9BXJ8 343 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 ASF1BQ9NVP2 202 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 PCDHGB4Q9UN71 923 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 CHCHD2Q9Y6H1 151 aaPredicted RBP15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 EXPH5Q8NEV8 1989 aa15.23■□□□□ 0.03
CCDC28A-202ENST00000611852 ASPDHA6ND91 283 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 PPM1BO75688 479 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 HMGN2P05204 90 aaKnown RBP15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 MAP3K8P41279 467 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 PSPHP78330 225 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 PMP22Q01453 160 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 ZNHIT3Q15649 155 aaPredicted RBP15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 SLC22A10Q63ZE4 541 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 MFSD12Q6NUT3 480 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 FAM180AQ6UWF9 173 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 SULF2Q8IWU5 870 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 SLC34A3Q8N130 599 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 CDRT4Q8N9R6 151 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 OR56A1Q8NGH5 318 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 OR4A15Q8NGL6 344 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 SFXN5Q8TD22 340 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 GRHL3Q8TE85 626 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 TMBIM1Q969X1 311 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 MOAP1Q96BY2 351 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 OMA1Q96E52 524 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 CCDC115Q96NT0 180 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 DEPPQ9NTK1 212 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 BTNL2Q9UIR0 455 aa15.22■□□□□ 0.03
CCDC28A-202ENST00000611852 NBASA2RRP1 2371 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms