RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 SH3GL1Q99961 368 aa11.22□□□□□ -0.61
SHKBP1-213ENST00000597325 HOPXQ9BPY8 73 aaPredicted RBP11.22□□□□□ -0.61
SHKBP1-213ENST00000597325 SLC39A3Q9BRY0 314 aa11.22□□□□□ -0.61
SHKBP1-213ENST00000597325 CNPPD1Q9BV87 410 aa11.22□□□□□ -0.61
SHKBP1-213ENST00000597325 C1orf21Q9H246 121 aa11.22□□□□□ -0.61
SHKBP1-213ENST00000597325 RAD21L1Q9H4I0 556 aa11.22□□□□□ -0.61
SHKBP1-213ENST00000597325 CXorf36Q9H7Y0 433 aa11.22□□□□□ -0.61
SHKBP1-213ENST00000597325 SPAG4Q9NPE6 437 aa11.22□□□□□ -0.61
SHKBP1-213ENST00000597325 ZCCHC3Q9NUD5 404 aaKnown RBP11.22□□□□□ -0.61
SHKBP1-213ENST00000597325 PTGFRNQ9P2B2 879 aa11.22□□□□□ -0.61
SHKBP1-213ENST00000597325 MAP10Q9P2G4 905 aa11.22□□□□□ -0.61
SHKBP1-213ENST00000597325 TCFL5Q9UL49 500 aa11.22□□□□□ -0.61
SHKBP1-213ENST00000597325 L3MBTL1Q9Y468 752 aa11.22□□□□□ -0.61
SHKBP1-213ENST00000597325 PCDHB14Q9Y5E9 798 aa11.22□□□□□ -0.61
SHKBP1-213ENST00000597325 CLCA3PQ9Y6N3 262 aa11.22□□□□□ -0.61
SHKBP1-213ENST00000597325 FER1L5A0AVI2 2057 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 EVPLLA8MZ36 301 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 FXYD1O00168 92 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 EMC8O43402 210 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 COQ9O75208 318 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 KLF7O75840 302 aaPredicted RBP11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 KRT75O95678 551 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 IFI6P09912 130 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 PTPN4P29074 926 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 CCT3P49368 545 aaKnown RBP11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 FOXL2P58012 376 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 PSME3P61289 254 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 NCALDP61601 193 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 SLC25A3Q00325 362 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 TP53BP2Q13625 1128 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 SPRED3Q2MJR0 410 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 PRICKLE4Q2TBC4 344 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 GTDC1Q4AE62 458 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 SFT2D3Q587I9 215 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 ZNF628Q5EBL2 1059 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 DLEU7Q6UYE1 221 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 BNC2Q6ZN30 1099 aaPredicted RBP11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 LANCL3Q6ZV70 420 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 ANKRD37Q7Z713 158 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 APLFQ8IW19 511 aaPredicted RBP11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 TMEM151BQ8IW70 566 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 DEFB107AQ8IZN7 70 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 OR8J3Q8NGG0 315 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 MCUR1Q96AQ8 359 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 ELP4Q96EB1 424 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 VPS50Q96JG6 964 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 SLC35G5Q96KT7 338 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 MS4A4EQ96PG1 132 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 BTBD10Q9BSF8 475 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 LRMDAQ9H2I8 198 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 CXorf21Q9HAI6 301 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 SIRT3Q9NTG7 399 aaPredicted RBP11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 ADA2Q9NZK5 511 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 MAT2BQ9NZL9 334 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 VAPAQ9P0L0 249 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 SLAMF8Q9P0V8 285 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 COPS7AQ9UBW8 275 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 POLHQ9Y253 713 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 FARSAQ9Y285 508 aaKnown RBP11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 AP3M1Q9Y2T2 418 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 CLDN16Q9Y5I7 305 aa11.21□□□□□ -0.61
SHKBP1-213ENST00000597325 SPTBP11277 2137 aa11.21□□□□□ -0.62
SHKBP1-213ENST00000597325 A0A087WV62 115 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 TRBV5-3A0A0A0MS03 114 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 A8MUA0 341 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 PLOD2O00469 737 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 BCAS2O75934 225 aaPredicted RBP11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 DNAJB5O75953 348 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 UMODP07911 640 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 PTPN6P29350 595 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 CPOXP36551 454 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 ANXA11P50995 505 aaKnown RBP11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 PRKAG1P54619 331 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 RPS18P62269 152 aaKnown RBP11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 MRPS35P82673 323 aaKnown RBP11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 MAP4K2Q12851 820 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 ZNF267Q14586 743 aaPredicted RBP11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 TMEM205Q6UW68 189 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 CPEB2Q7Z5Q1 589 aaKnown RBP11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 RAB43Q86YS6 212 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 ARHGAP24Q8N264 748 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 OR7G2Q8NG99 324 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 FBXO27Q8NI29 283 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 PNPT1Q8TCS8 783 aaKnown RBP11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 FAM120BQ96EK7 910 aaKnown RBP11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 AURKBQ96GD4 344 aaPredicted RBP11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 ANKRD27Q96NW4 1050 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 LPAR4Q99677 370 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 CPPED1Q9BRF8 314 aaPredicted RBP11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 THUMPD3Q9BV44 507 aaKnown RBP11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 RUBCNLQ9H714 662 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 TPT1P8Q9HAU6 139 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 SLC6A13Q9NSD5 602 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 TAS2R1Q9NYW7 299 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 SLC25A37Q9NYZ2 338 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 PCDHGA6Q9Y5G7 932 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 PKDREJQ9NTG1 2253 aa11.2□□□□□ -0.62
SHKBP1-213ENST00000597325 SAGE2PA6NJ88 616 aa11.19□□□□□ -0.62
SHKBP1-213ENST00000597325 CLIC1O00299 241 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms