RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 PROK2Q9HC23 129 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 ZNF446Q9NWS9 450 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 CNOT11Q9UKZ1 510 aaKnown RBP13.39□□□□□ -0.27
VRK3-206ENST00000594090 NPIPA1Q9UND3 350 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 TRPC5OSA6NMA1 111 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 TP53I11O14683 189 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 LAMP1P11279 417 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 NAGAP17050 411 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 PLGLB1Q02325 96 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 FOXO1Q12778 655 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 MLC1Q15049 377 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 CPTPQ5TA50 214 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 TENM4Q6N022 2769 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 OGFOD2Q6N063 350 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 CAMKMTQ7Z624 323 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 SLC34A3Q8N130 599 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 FAM26EQ8N5C1 309 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 SPPL2AQ8TCT8 520 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 LRRC8CQ8TDW0 803 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 NUDT8Q8WV74 236 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 COQ8BQ96D53 544 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 SECISBP2Q96T21 854 aaKnown RBP13.39□□□□□ -0.27
VRK3-206ENST00000594090 PRPF18Q99633 342 aaKnown RBP13.39□□□□□ -0.27
VRK3-206ENST00000594090 HELZ2Q9BYK8 2649 aaKnown RBP13.39□□□□□ -0.27
VRK3-206ENST00000594090 TTTY12Q9BZ98 90 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 ACBD3Q9H3P7 528 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 ATAD3AQ9NVI7 634 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 TUBA8Q9NY65 449 aaPredicted RBP13.39□□□□□ -0.27
VRK3-206ENST00000594090 MAPRE3Q9UPY8 281 aa13.39□□□□□ -0.27
VRK3-206ENST00000594090 NBASA2RRP1 2371 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 ACOT7O00154 380 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 ASNA1O43681 348 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 HS6ST1O60243 411 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 GLSO94925 669 aaPredicted RBP13.38□□□□□ -0.27
VRK3-206ENST00000594090 ZIC2O95409 532 aaPredicted RBP13.38□□□□□ -0.27
VRK3-206ENST00000594090 ABCB1P08183 1280 aaPredicted RBP13.38□□□□□ -0.27
VRK3-206ENST00000594090 ALDOCP09972 364 aaKnown RBP13.38□□□□□ -0.27
VRK3-206ENST00000594090 KCNJ2P63252 427 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 PSPHP78330 225 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 RPP38P78345 283 aaKnown RBP13.38□□□□□ -0.27
VRK3-206ENST00000594090 PSG6Q00889 435 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 KRTCAP3Q53RY4 240 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 TBCELQ5QJ74 424 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 BNC2Q6ZN30 1099 aaPredicted RBP13.38□□□□□ -0.27
VRK3-206ENST00000594090 SLC22A16Q86VW1 577 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 SLC44A2Q8IWA5 706 aaPredicted RBP13.38□□□□□ -0.27
VRK3-206ENST00000594090 NATD1Q8N6N6 113 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 PIWIL2Q8TC59 973 aaKnown RBP13.38□□□□□ -0.27
VRK3-206ENST00000594090 DYDC1Q8WWB3 177 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 DIO2Q92813 273 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 TMBIM1Q969X1 311 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 DOHHQ9BU89 302 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 BHLHE41Q9C0J9 482 aaPredicted RBP13.38□□□□□ -0.27
VRK3-206ENST00000594090 WDR55Q9H6Y2 383 aaPredicted RBP13.38□□□□□ -0.27
VRK3-206ENST00000594090 IL1RL2Q9HB29 575 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 NTMQ9P121 344 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 OSGIN2Q9Y236 505 aa13.38□□□□□ -0.27
VRK3-206ENST00000594090 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.38□□□□□ -0.27
VRK3-206ENST00000594090 UQCRHLA0A096LP55 91 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 GOLGA8QA0A0J9YX86 632 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 A0A1W2PRB8 838 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 GOLGA8OA6NCC3 632 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 ANKRD33BA6NCL7 494 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 FAM166BA8MTA8 275 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 GOLGA8NF8WBI6 632 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 SEMA7AO75326 666 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 EPHA3P29320 983 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 PPIAP62937 165 aaKnown RBP13.37□□□□□ -0.27
VRK3-206ENST00000594090 RBPJQ06330 500 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 ESPL1Q14674 2120 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 CMPK2Q5EBM0 449 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 BICRALQ6AI39 1079 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 DESI1Q6ICB0 168 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 RGS9BPQ6ZS82 235 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 NUP54Q7Z3B4 507 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 MAVSQ7Z434 540 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 WDR53Q7Z5U6 358 aaPredicted RBP13.37□□□□□ -0.27
VRK3-206ENST00000594090 GHDCQ8N2G8 530 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 HGDQ93099 445 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 MAELQ96JY0 434 aaKnown RBP13.37□□□□□ -0.27
VRK3-206ENST00000594090 C7orf26Q96N11 449 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 LMF2Q9BU23 707 aaKnown RBP13.37□□□□□ -0.27
VRK3-206ENST00000594090 DUSP26Q9BV47 211 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 DPY30Q9C005 99 aa13.37□□□□□ -0.27
VRK3-206ENST00000594090 SIRT3Q9NTG7 399 aaPredicted RBP13.37□□□□□ -0.27
VRK3-206ENST00000594090 INTS9Q9NV88 658 aaKnown RBP13.37□□□□□ -0.27
VRK3-206ENST00000594090 BOKQ9UMX3 212 aaPredicted RBP13.37□□□□□ -0.27
VRK3-206ENST00000594090 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.36□□□□□ -0.27
VRK3-206ENST00000594090 OR6C70A6NIJ9 312 aa13.36□□□□□ -0.27
VRK3-206ENST00000594090 LRRC3CA6NJW4 275 aa13.36□□□□□ -0.27
VRK3-206ENST00000594090 ZNF195O14628 629 aa13.36□□□□□ -0.27
VRK3-206ENST00000594090 ANKRD28O15084 1053 aa13.36□□□□□ -0.27
VRK3-206ENST00000594090 TSPAN2O60636 221 aa13.36□□□□□ -0.27
VRK3-206ENST00000594090 UGT2B11O75310 529 aa13.36□□□□□ -0.27
VRK3-206ENST00000594090 AGFG2O95081 481 aa13.36□□□□□ -0.27
VRK3-206ENST00000594090 STSP08842 583 aa13.36□□□□□ -0.27
VRK3-206ENST00000594090 CASP3P42574 277 aa13.36□□□□□ -0.27
VRK3-206ENST00000594090 HSF1Q00613 529 aa13.36□□□□□ -0.27
VRK3-206ENST00000594090 UBAP2LQ14157 1087 aaKnown RBP13.36□□□□□ -0.27
VRK3-206ENST00000594090 ZNHIT3Q15649 155 aaPredicted RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms