RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 RCAN2Q14206 197 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 SMARCD3Q6STE5 483 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 DHRS13Q6UX07 377 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 PM20D2Q8IYS1 436 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 ZCCHC7Q8N3Z6 543 aaKnown RBP9.28□□□□□ -0.92
LIG3-216ENST00000593099 OR2I1PQ8NGU4 316 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 OR6N1Q8NGY5 312 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 ZPBPQ9BS86 351 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 NPLQ9BXD5 320 aaPredicted RBP9.28□□□□□ -0.92
LIG3-216ENST00000593099 ATP13A2Q9NQ11 1180 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 NEU3Q9UQ49 428 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 C15orf41Q9Y2V0 281 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 ZNF451Q9Y4E5 1061 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 PCDHA9Q9Y5H5 950 aa9.28□□□□□ -0.92
LIG3-216ENST00000593099 A0A087WXM4 84 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 A0A1W2PQ72 361 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 NPIPA5E9PKD4 350 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 TMEM127O75204 238 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 CLPTM1O96005 669 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 MT-CO3P00414 261 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 ETFAP13804 333 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 ZNF28P17035 718 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 NPR2P20594 1047 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 DNAJA1P31689 397 aaKnown RBP9.27□□□□□ -0.93
LIG3-216ENST00000593099 KDELR2P33947 212 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 MYBPC1Q00872 1141 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 KCNAB1Q14722 419 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 ARMCX4Q5H9R4 360 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 CARM1Q86X55 608 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 TREML1Q86YW5 311 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 ZNF540Q8NDQ6 660 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 CANT1Q8WVQ1 401 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 LRTOMTQ8WZ04 291 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 ZNF419Q96HQ0 510 aaPredicted RBP9.27□□□□□ -0.93
LIG3-216ENST00000593099 ZC3H10Q96K80 434 aaKnown RBP9.27□□□□□ -0.93
LIG3-216ENST00000593099 RACGAP1Q9H0H5 632 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 ACSS1Q9NUB1 689 aaPredicted RBP9.27□□□□□ -0.93
LIG3-216ENST00000593099 POMT2Q9UKY4 750 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 NPIPA1Q9UND3 350 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 GABRR3A8MPY1 467 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 TNFSF14O43557 240 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 SLITRK5O94991 958 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 PDGFBP01127 241 aaPredicted RBP9.27□□□□□ -0.93
LIG3-216ENST00000593099 POU3F3P20264 500 aaPredicted RBP9.27□□□□□ -0.93
LIG3-216ENST00000593099 PTDSS1P48651 473 aaKnown RBP9.27□□□□□ -0.93
LIG3-216ENST00000593099 MERTKQ12866 999 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 TRIP6Q15654 476 aaKnown RBP9.27□□□□□ -0.93
LIG3-216ENST00000593099 NPTX1Q15818 432 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 OCLNQ16625 522 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 CYP27C1Q4G0S4 372 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 GUSBP11Q6P575 273 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 DNM1P34Q6PK57 102 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 CYHR1Q6ZMK1 362 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 SLC35F3Q8IY50 421 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 CBR4Q8N4T8 237 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 OR52R1Q8NGF1 315 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 RFKQ969G6 155 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 CIDECQ96AQ7 238 aaPredicted RBP9.27□□□□□ -0.93
LIG3-216ENST00000593099 FKBP10Q96AY3 582 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 ZNF570Q96NI8 536 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 DOHHQ9BU89 302 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 SGPP1Q9BX95 441 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 ZNF224Q9NZL3 707 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 COMMD3-BMI1R4GMX3 469 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 A0A1B0GTQ1 180 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 CD46P15529 392 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 SFT2D3Q587I9 215 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 LCN1P1Q5VSP4 162 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 ZCCHC12Q6PEW1 402 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 C11orf88Q6PI97 169 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 TMEM19Q96HH6 336 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 CCDC106Q9BWC9 280 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 SMPD3Q9NY59 655 aaPredicted RBP9.27□□□□□ -0.93
LIG3-216ENST00000593099 PTGFRNQ9P2B2 879 aa9.27□□□□□ -0.93
LIG3-216ENST00000593099 BCKDKO14874 412 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 MPZL2O60487 215 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 CTNSO60931 367 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 CRTAPO75718 401 aaPredicted RBP9.26□□□□□ -0.93
LIG3-216ENST00000593099 HMGN2P05204 90 aaKnown RBP9.26□□□□□ -0.93
LIG3-216ENST00000593099 CD1CP29017 333 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 HACD2Q6Y1H2 254 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 OR14L1PQ8NHC6 308 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 CREB3L4Q8TEY5 395 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 TP53INP1Q96A56 240 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 COX14Q96I36 57 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 IP6K3Q96PC2 410 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 FCRL4Q96PJ5 515 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 CCNB1IP1Q9NPC3 277 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 SLAMF7Q9NQ25 335 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 KCMF1Q9P0J7 381 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 SPAG17Q6Q759 2223 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 THSD7BQ9C0I4 1608 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 VSTM2BA6NLU5 285 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 HCN1O60741 890 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 ALOX12BO75342 701 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 IFI30P13284 250 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 SF3B4Q15427 424 aaKnown RBP eCLIP9.26□□□□□ -0.931e-6■■■■□ 22
LIG3-216ENST00000593099 TMEM225Q6GV28 225 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 UBE2J2Q8N2K1 259 aa9.26□□□□□ -0.93
LIG3-216ENST00000593099 EGLN2Q96KS0 407 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms