RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 COQ9O75208 318 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 REM1O75628 298 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 SLITRK5O94991 958 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 SNRPB2P08579 225 aaKnown RBP11.35□□□□□ -0.59
SS18-225ENST00000585121 GCKP35557 465 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 TRPC1P48995 793 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 NCBP2P52298 156 aaKnown RBP eCLIP11.35□□□□□ -0.591e-8■■■□□ 16.9
SS18-225ENST00000585121 MRPS22P82650 360 aaKnown RBP11.35□□□□□ -0.59
SS18-225ENST00000585121 PCLAFQ15004 111 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 CEBPEQ15744 281 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 EMC4Q5J8M3 183 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 BICRALQ6AI39 1079 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 CLEC6AQ6EIG7 209 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 FAM71E1Q6IPT2 247 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 SLC30A6Q6NXT4 461 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 HDXQ7Z353 690 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 MCEMP1Q8IX19 187 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 OR1J4Q8NGS1 313 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 TMEM41AQ96HV5 264 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 LRTM1Q9HBL6 345 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 C1orf109Q9NX04 203 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 HRH3Q9Y5N1 445 aa11.35□□□□□ -0.59
SS18-225ENST00000585121 DNAJC13O75165 2243 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 C15orf38-AP3S2A0A0A6YYH1 394 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 MYO1GB0I1T2 1018 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 TO15178 435 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 NPHS1O60500 1241 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 ABCB7O75027 752 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 SPAG7O75391 227 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 ERN1O75460 977 aaKnown RBP11.34□□□□□ -0.59
SS18-225ENST00000585121 ELAVL4P26378 380 aaKnown RBP11.34□□□□□ -0.59
SS18-225ENST00000585121 IL12BP29460 328 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 ALDH3A1P30838 453 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 NUP107P57740 925 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 DUSP8Q13202 625 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 SNTA1Q13424 505 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 EFR3AQ14156 821 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 SF3B4Q15427 424 aaKnown RBP eCLIP11.34□□□□□ -0.594e-8■■■□□ 18.5
SS18-225ENST00000585121 TMEM81Q6P7N7 255 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 GDF7Q7Z4P5 450 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 MARVELD2Q8N4S9 558 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 LILRB4Q8NHJ6 448 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 TMBIM1Q969X1 311 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 COL21A1Q96P44 957 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 BTBD9Q96Q07 612 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 OSBPL11Q9BXB4 747 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 SLC6A15Q9H2J7 730 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 VIPAS39Q9H9C1 493 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 KCNJ16Q9NPI9 418 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 TAS2R7Q9NYW3 318 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 TNFRSF10DQ9UBN6 386 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 RNF6Q9Y252 685 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 GPR55Q9Y2T6 319 aaPredicted RBP11.34□□□□□ -0.59
SS18-225ENST00000585121 C15orf41Q9Y2V0 281 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 OR10H1Q9Y4A9 318 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 PCDHGB3Q9Y5G1 929 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 CREBBPQ92793 2442 aa11.34□□□□□ -0.59
SS18-225ENST00000585121 A0A087WV62 115 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 PRAMEF25A6NGN4 478 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 OR6C70A6NIJ9 312 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 GNB5O14775 395 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 JUNP05412 331 aaKnown RBP11.33□□□□□ -0.6
SS18-225ENST00000585121 DDX5P17844 614 aaKnown RBP11.33□□□□□ -0.6
SS18-225ENST00000585121 PRPH2P23942 346 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 SERPINB5P36952 375 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 CDK9P50750 372 aaKnown RBP11.33□□□□□ -0.6
SS18-225ENST00000585121 ZNF155Q12901 538 aaPredicted RBP11.33□□□□□ -0.6
SS18-225ENST00000585121 ZNHIT3Q15649 155 aaPredicted RBP11.33□□□□□ -0.6
SS18-225ENST00000585121 C1orf185Q5T7R7 199 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 TIGD3Q6B0B8 471 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 ANGPTL8Q6UXH0 198 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 RNF165Q6ZSG1 346 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 SLC44A2Q8IWA5 706 aaPredicted RBP11.33□□□□□ -0.6
SS18-225ENST00000585121 DDIASQ8IXT1 998 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 PM20D2Q8IYS1 436 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 CLYBLQ8N0X4 340 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 MREGQ8N565 214 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 SIMC1Q8NDZ2 872 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 TCP10LQ8TDR4 215 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 HGDQ93099 445 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 VSTM2LQ96N03 204 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 GNRHR2Q96P88 292 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 TTYH2Q9BSA4 534 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 FOLH1BQ9HBA9 442 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 TNFRSF12AQ9NP84 129 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 DDX18Q9NVP1 670 aaKnown RBP11.33□□□□□ -0.6
SS18-225ENST00000585121 ZNF446Q9NWS9 450 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 SPRR3Q9UBC9 169 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 TMED5Q9Y3A6 229 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 TRAF6Q9Y4K3 522 aa11.33□□□□□ -0.6
SS18-225ENST00000585121 NCOA6Q14686 2063 aaPredicted RBP11.32□□□□□ -0.6
SS18-225ENST00000585121 FAM90A27PA6NNH2 459 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 NPIPB8E9PQR5 432 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 ICOSLGO75144 302 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 UGT2B11O75310 529 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 HPNP05981 417 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 FGF4P08620 206 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 LINC00032P0C843 101 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 SOX18P35713 384 aa11.32□□□□□ -0.6
SS18-225ENST00000585121 CASP8Q14790 479 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms