RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 C5AR2Q9P296 337 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 SCOCQ9UIL1 159 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 ACSL6Q9UKU0 697 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 RARRES3Q9UL19 164 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 OAZ3Q9UMX2 235 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 USP22Q9UPT9 525 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 PCDHGA8Q9Y5G5 932 aa7.46□□□□□ -1.22
VPS39-213ENST00000570062 GPC6Q9Y625 555 aaPredicted RBP7.46□□□□□ -1.22
VPS39-213ENST00000570062 LRP4O75096 1905 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 ARRDC5A6NEK1 342 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 ACOX3O15254 700 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 PRAMEF10O60809 474 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 UGT2B11O75310 529 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 STX11O75558 287 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 MFN2O95140 757 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 OXSR1O95747 527 aaPredicted RBP7.45□□□□□ -1.22
VPS39-213ENST00000570062 STATHP02808 62 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 RPLP0P05388 317 aaKnown RBP7.45□□□□□ -1.22
VPS39-213ENST00000570062 BCHEP06276 602 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 DBIP07108 87 aaKnown RBP7.45□□□□□ -1.22
VPS39-213ENST00000570062 THBS1P07996 1170 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 C8orf89P0DMQ9 161 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 OR12D1P0DN82 309 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 ANXA8P13928 327 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 TNNI3P19429 210 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 AGXTP21549 392 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 FBLP22087 321 aaKnown RBP7.45□□□□□ -1.22
VPS39-213ENST00000570062 ALAS2P22557 587 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 ACP1P24666 158 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 PRKAR1BP31321 381 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 RRM2P31350 389 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 CSTF2P33240 577 aaKnown RBP eCLIP7.45□□□□□ -1.22
VPS39-213ENST00000570062 SOX11P35716 441 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 IFNGR2P38484 337 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 MC3RP41968 323 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 KCNJ5P48544 419 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 SEPHS1P49903 392 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 AQP4P55087 323 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 SNRPNP63162 240 aaKnown RBP7.45□□□□□ -1.22
VPS39-213ENST00000570062 KCNJ10P78508 379 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 OCA2Q04671 838 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 PRICKLE4Q2TBC4 344 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 GPAT3Q53EU6 434 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 SFT2D3Q587I9 215 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 NHSL2Q5HYW2 709 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 KRT80Q6KB66 452 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 RHBDD2Q6NTF9 364 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 TTLL10Q6ZVT0 673 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 STK32CQ86UX6 486 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 GATAD2AQ86YP4 633 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 C10orf111Q8N326 155 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 GALNT4Q8N4A0 578 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 AGBL5Q8NDL9 886 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 CHDHQ8NE62 594 aaPredicted RBP7.45□□□□□ -1.22
VPS39-213ENST00000570062 PLPP5Q8NEB5 264 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 IFI44Q8TCB0 444 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 MAGEE2Q8TD90 523 aaPredicted RBP7.45□□□□□ -1.22
VPS39-213ENST00000570062 HOXB13Q92826 284 aaPredicted RBP7.45□□□□□ -1.22
VPS39-213ENST00000570062 DAZLQ92904 295 aaKnown RBP7.45□□□□□ -1.22
VPS39-213ENST00000570062 MAL2Q969L2 176 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 ANKRD9Q96BM1 317 aaPredicted RBP7.45□□□□□ -1.22
VPS39-213ENST00000570062 ZNF501Q96CX3 271 aaPredicted RBP7.45□□□□□ -1.22
VPS39-213ENST00000570062 C7orf34Q96L11 122 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 COL21A1Q96P44 957 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 ZNF300Q96RE9 604 aaPredicted RBP7.45□□□□□ -1.22
VPS39-213ENST00000570062 CDC6Q99741 560 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 PIP5K1AQ99755 562 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 ZPBPQ9BS86 351 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 GTPBP2Q9BX10 602 aaKnown RBP7.45□□□□□ -1.22
VPS39-213ENST00000570062 ANKRD60Q9BZ19 345 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 HOXD1Q9GZZ0 328 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 SPRTNQ9H040 489 aaPredicted RBP7.45□□□□□ -1.22
VPS39-213ENST00000570062 ANKRD19PQ9H560 264 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 SYNPO2LQ9H987 977 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 ZNF556Q9HAH1 456 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 CXorf21Q9HAI6 301 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 HHATLQ9HCP6 504 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 STARD5Q9NSY2 213 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 KLHL3Q9UH77 587 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 TMCC3Q9ULS5 477 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 SAMHD1Q9Y3Z3 626 aaKnown RBP7.45□□□□□ -1.22
VPS39-213ENST00000570062 AP4B1Q9Y6B7 739 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 ENPP4Q9Y6X5 453 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 HSPE1-MOB4S4R3N1 261 aa7.45□□□□□ -1.22
VPS39-213ENST00000570062 PCM1Q15154 2024 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 FAM149AA5PLN7 773 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 SAC3D1A6NKF1 404 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 OR6C76A6NM76 312 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 H3BMH7 237 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 FGF17O60258 216 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 LRP3O75074 770 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 TNFAIP8O95379 198 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 ALPLP05186 524 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 ALPPP05187 535 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 FESP07332 822 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 RPSAP08865 295 aaKnown RBP7.44□□□□□ -1.22
VPS39-213ENST00000570062 THRBP10828 461 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 RORAP35398 523 aa7.44□□□□□ -1.22
VPS39-213ENST00000570062 CAPGP40121 348 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms