RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SPEF1Q9Y4P9 236 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 I3L521 148 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 ICMTO60725 284 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 LATS1O95835 1130 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 HLA-DPB1P04440 258 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 HMGN2P05204 90 aaKnown RBP13.67□□□□□ -0.22
VPS35-210ENST00000568784 HOXD10P28358 340 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 IFNGR2P38484 337 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 KCNJ5P48544 419 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 ASAH1Q13510 395 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 RAB33AQ14088 237 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 CPEB1Q9BZB8 566 aaKnown RBP13.67□□□□□ -0.22
VPS35-210ENST00000568784 CHIAQ9BZP6 476 aa13.67□□□□□ -0.22
VPS35-210ENST00000568784 MRPL15Q9P015 296 aaKnown RBP13.67□□□□□ -0.22
VPS35-210ENST00000568784 TRBV23OR9-2A0A075B6M9 112 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 WASH3PC4AMC7 463 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 SCO1O75880 301 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 SLC2A10O95528 541 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 MSL3P1P0C860 447 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 ACVR1BP36896 505 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 NDUFAF5Q5TEU4 345 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 CDH24Q86UP0 819 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 VRK2Q86Y07 508 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 KLHL36Q8N4N3 616 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 PIGXQ8TBF5 258 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 ZFPM2Q8WW38 1151 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 DPH7Q9BTV6 452 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 DDX31Q9H8H2 851 aaKnown RBP13.66□□□□□ -0.22
VPS35-210ENST00000568784 TDP1Q9NUW8 608 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 NUDT15Q9NV35 164 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 TAS2R7Q9NYW3 318 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 A0A0G2JMP0 313 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 A0A0X1KG70 313 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 IQCMA0A1B0GVH7 501 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 AKAP8O43823 692 aaKnown RBP13.66□□□□□ -0.22
VPS35-210ENST00000568784 TMPRSS11DO60235 418 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 SEMA7AO75326 666 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 PAHP00439 452 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 CTSLP07711 333 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 AHRP35869 848 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 PCBP3P57721 371 aaKnown RBP13.66□□□□□ -0.22
VPS35-210ENST00000568784 PLK5Q496M5 336 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 FAM27D1Q5T7N8 215 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 FAM46CQ5VWP2 391 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 ANKRD54Q6NXT1 300 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 AMZ2Q86W34 360 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 NRMQ8IXM6 262 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 BBS1Q8NFJ9 593 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 OR4M2Q8NGB6 313 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 ZNF431Q8TF32 576 aaPredicted RBP13.66□□□□□ -0.22
VPS35-210ENST00000568784 SMAP2Q8WU79 429 aaPredicted RBP13.66□□□□□ -0.22
VPS35-210ENST00000568784 RASSF5Q8WWW0 418 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 TRAPPC4Q9Y296 219 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 NCKAP1Q9Y2A7 1128 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 PRODHO43272 600 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 HYAL3O43820 417 aaPredicted RBP13.66□□□□□ -0.22
VPS35-210ENST00000568784 GREM1O60565 184 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 SLC35G4P0C7Q5 338 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 ARSBP15848 533 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 SSTR2P30874 369 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 SLC6A11P48066 632 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 CLDN2P57739 230 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 ZNF33BQ06732 778 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 PLPP4Q5VZY2 271 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 FAM129CQ86XR2 697 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 CPOQ8IVL8 374 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 UXS1Q8NBZ7 420 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 TM4SF18Q96CE8 201 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 CCDC120Q96HB5 630 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 FCRL1Q96LA6 429 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 SPATA5L1Q9BVQ7 753 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 CDCP1Q9H5V8 836 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 SLC25A19Q9HC21 320 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 RBFOX1Q9NWB1 397 aaKnown RBP13.66□□□□□ -0.22
VPS35-210ENST00000568784 ING4Q9UNL4 249 aa13.66□□□□□ -0.22
VPS35-210ENST00000568784 DIMT1Q9UNQ2 313 aaKnown RBP13.66□□□□□ -0.22
VPS35-210ENST00000568784 MKI67P46013 3256 aaKnown RBP13.66□□□□□ -0.22
VPS35-210ENST00000568784 ERVH48-1M5A8F1 160 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 NDUFS4O43181 175 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 CST5P28325 142 aaPredicted RBP13.65□□□□□ -0.22
VPS35-210ENST00000568784 EVI2BP34910 448 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 HMGA2P52926 109 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 BNC1Q01954 994 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 CAMK1Q14012 370 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 CDC73Q6P1J9 531 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 TCEAL8Q8IYN2 117 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 CPA6Q8N4T0 437 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 VN1R2Q8NFZ6 395 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 NEURL3Q96EH8 262 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 DHRS1Q96LJ7 313 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 DEFB118Q96PH6 123 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 HHIPQ96QV1 700 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 DCLRE1CQ96SD1 692 aaKnown RBP13.65□□□□□ -0.22
VPS35-210ENST00000568784 SPHK2Q9NRA0 654 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 SCN3AQ9NY46 2000 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 GABRPO00591 440 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 SOCS6O14544 535 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 DVL2O14641 736 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 DPM1O60762 260 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 DHFRP00374 187 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms