RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 PSKH1P11801 424 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 CDH1P12830 882 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 RNH1P13489 461 aaKnown RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 CYP11B1P15538 503 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 DPEP1P16444 411 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 GNAZP19086 355 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 ME2P23368 584 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 THBS4P35443 961 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 RGS6P49758 472 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 SERPINH1P50454 418 aaKnown RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 AKR1D1P51857 326 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 PNLIPRP1P54315 467 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 KCNJ2P63252 427 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 TNFRSF9Q07011 255 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 ASAH1Q13510 395 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 CSHL1Q14406 222 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 IRF4Q15306 451 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 TRIP13Q15645 432 aaPredicted RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 SNAPC1Q16533 368 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 SLC18A3Q16572 532 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 PDLIM3Q53GG5 364 aaPredicted RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 AKIRIN2Q53H80 203 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 ARL6IP4Q66PJ3 421 aaKnown RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 ATG9BQ674R7 924 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 KIAA1324Q6UXG2 1013 aaKnown RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 CCNI2Q6ZMN8 369 aaPredicted RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 C15orf39Q6ZRI6 1047 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 RBPMS2Q6ZRY4 209 aaKnown RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 TMEM26Q6ZUK4 368 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 CHST9Q7L1S5 443 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 GPBP1Q86WP2 473 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 CATSPERDQ86XM0 798 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 C16orf71Q8IYS4 520 aaPredicted RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 ADGRF4Q8IZF3 695 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 CENPLQ8N0S6 344 aaPredicted RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 METTL4Q8N3J2 472 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 ZBTB2Q8N680 514 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 PI4KAP1Q8N8J0 262 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 Q8N9P0 234 aaPredicted RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 TC2NQ8N9U0 490 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 OR2V1Q8NHB1 315 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 STOML3Q8TAV4 291 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 ACTRT1Q8TDG2 376 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 GDPD5Q8WTR4 605 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 TMBIM1Q969X1 311 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 PCDHB18PQ96TA0 734 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 PFDN5Q99471 154 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 CDCA3Q99618 268 aaPredicted RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 EBNA1BP2Q99848 306 aaKnown RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 P2RY13Q9BPV8 354 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 ZNF559Q9BR84 538 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 PCGF1Q9BSM1 259 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 HTATIP2Q9BUP3 242 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 POLDIP3Q9BY77 421 aaKnown RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 PCBD2Q9H0N5 130 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 SLC25A32Q9H2D1 315 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 TRABDQ9H4I3 376 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 GAREM1Q9H706 876 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 DDX31Q9H8H2 851 aaKnown RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 USP29Q9HBJ7 922 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 VAT1LQ9HCJ6 419 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 ZBTB26Q9HCK0 441 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 CHST11Q9NPF2 352 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 NANSQ9NR45 359 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 IMPAD1Q9NX62 359 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 SLC17A7Q9P2U7 560 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 UPB1Q9UBR1 384 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 SIX4Q9UIU6 781 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 TBC1D24Q9ULP9 559 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 GDAQ9Y2T3 454 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 GOLT1BQ9Y3E0 138 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 ADAM18Q9Y3Q7 739 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 PKP3Q9Y446 797 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 POLR3HQ9Y535 204 aaPredicted RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 BCL9O00512 1426 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 UACAQ9BZF9 1416 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 ADGRL3Q9HAR2 1447 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 AK9Q5TCS8 1911 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 DNMBPQ6XZF7 1577 aa4.77□□□□□ -1.65
VPS35-205ENST00000563984 DHX57Q6P158 1386 aaKnown RBP4.77□□□□□ -1.65
VPS35-205ENST00000563984 SPATA31A1Q5TZJ5 1347 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 ADGRF5Q8IZF2 1346 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 ZNF541Q9H0D2 1346 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 AKAP12Q02952 1782 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 EDDM13A0A1B0GTR0 161 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 TRABD2BA6NFA1 517 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 FABP12A6NFH5 140 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 HAS3O00219 553 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 CDC7O00311 574 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 KPNA3O00505 521 aaPredicted RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 ABCD4O14678 606 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 CFLARO15519 480 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 ZNF208O43345 1280 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 KDELR3O43731 214 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 EPOP01588 193 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 MELTFP08582 738 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 F7P08709 466 aaPredicted RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 STAG3L1P0CL83 205 aa4.76□□□□□ -1.65
VPS35-205ENST00000563984 OGNP20774 298 aaKnown RBP4.76□□□□□ -1.65
VPS35-205ENST00000563984 AGAP20933 346 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms