RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 C10orf111Q8N326 155 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 D2HGDHQ8N465 521 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 OR4C6Q8NH72 309 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 MAFAQ8NHW3 353 aaPredicted RBP7.04□□□□□ -1.28
VPS39-204ENST00000561818 ZFAND2BQ8WV99 257 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 APOBEC4Q8WW27 367 aaKnown RBP7.04□□□□□ -1.28
VPS39-204ENST00000561818 RLN3Q8WXF3 142 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 KLHL6Q8WZ60 621 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 EDAQ92838 391 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 DAZLQ92904 295 aaKnown RBP7.04□□□□□ -1.28
VPS39-204ENST00000561818 RIT1Q92963 219 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 LOXL4Q96JB6 756 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 MPP4Q96JB8 637 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 SLC41A2Q96JW4 573 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 ZC3H10Q96K80 434 aaKnown RBP7.04□□□□□ -1.28
VPS39-204ENST00000561818 LRFN5Q96NI6 719 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 GUCD1Q96NT3 240 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 SLC38A2Q96QD8 506 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 NODALQ96S42 347 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 MBOAT4Q96T53 435 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 ARHGDIGQ99819 225 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 LMF2Q9BU23 707 aaKnown RBP7.04□□□□□ -1.28
VPS39-204ENST00000561818 KRTAP3-3Q9BYR6 98 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 KRTAP3-2Q9BYR7 98 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 UCK2Q9BZX2 261 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 ADNPQ9H2P0 1102 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 RIBC2Q9H4K1 309 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 ZNF768Q9H5H4 540 aaKnown RBP7.04□□□□□ -1.28
VPS39-204ENST00000561818 NMNAT1Q9HAN9 279 aaPredicted RBP7.04□□□□□ -1.28
VPS39-204ENST00000561818 MKKSQ9NPJ1 570 aaPredicted RBP7.04□□□□□ -1.28
VPS39-204ENST00000561818 TIMMDC1Q9NPL8 285 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 PRTFDC1Q9NRG1 225 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 MED17Q9NVC6 651 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 CLN6Q9NWW5 311 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 SELENONQ9NZV5 590 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 NDOR1Q9UHB4 597 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 TMEFF2Q9UIK5 374 aaPredicted RBP7.04□□□□□ -1.28
VPS39-204ENST00000561818 PNMA8BQ9ULN7 279 aaPredicted RBP7.04□□□□□ -1.28
VPS39-204ENST00000561818 SLC35A3Q9Y2D2 325 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 TESMINQ9Y4I5 508 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 PCDHGA10Q9Y5H3 936 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 U3KQV3 271 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 FANCMQ8IYD8 2048 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 TRIOBPQ9H2D6 2365 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 ATG2BQ96BY7 2078 aa7.04□□□□□ -1.28
VPS39-204ENST00000561818 TRBV23OR9-2A0A075B6M9 112 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 IGHV1OR21-1A0A087WYE8 117 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 PRAMEF33A0A0G2JMD5 474 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 A0A0G2JN53 185 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 A0A1B0GTQ1 180 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 A0A1B0GX78 115 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 C2orf72A6NCS6 295 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 AGAP5A6NIR3 686 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 SLC9B1P1A6NJY1 282 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 GLOD5A6NK44 160 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 SLC1A7O00341 560 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 DSCR3O14972 297 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 PPM1DO15297 605 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 P2RX6O15547 441 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 CHST10O43529 356 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 AHCYL1O43865 530 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 OR10H3O60404 316 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 PRAMEF10O60809 474 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 GCM2O75603 506 aaPredicted RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 OR2B3O76000 313 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 NKX2-2O95096 273 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 B3GALT4O96024 378 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 WNT1P04628 370 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 PIPP12273 146 aaPredicted RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 NELFEP18615 380 aaKnown RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 EFNA1P20827 205 aaPredicted RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 RPS4Y1P22090 263 aaKnown RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 CBLP22681 906 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 RBM34P42696 430 aaKnown RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 ST13P50502 369 aaKnown RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 DAPP51397 102 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 SMSP52788 366 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 CRYBA2P53672 197 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 MAZP56270 477 aaKnown RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 RGS8P57771 180 aaPredicted RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 ISL1P61371 349 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 RPP38P78345 283 aaKnown RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 ZNF155Q12901 538 aaPredicted RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 C1orf61Q13536 156 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 RUNX2Q13950 521 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 MAD2L1BPQ15013 274 aaPredicted RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 DECR1Q16698 335 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS39-204ENST00000561818 PRICKLE4Q2TBC4 344 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 CYP27C1Q4G0S4 372 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 EXOSC6Q5RKV6 272 aaKnown RBP7.03□□□□□ -1.28
VPS39-204ENST00000561818 SLC25A30Q5SVS4 291 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 DCST2Q5T1A1 773 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 ARMC4Q5T2S8 1044 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 FRMPD2BQ6IN97 320 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 TCTN3Q6NUS6 607 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 TMEM71Q6P5X7 295 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 ZNF613Q6PF04 617 aa7.03□□□□□ -1.28
VPS39-204ENST00000561818 ERI1Q8IV48 349 aaKnown RBP7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms