RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 DOCK10Q96BY6 2186 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 ZZEF1O43149 2961 aa9.33□□□□□ -0.92
USP3-216ENST00000559873 CFAP47Q6ZTR5 3102 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 TRAV17A0A0B4J275 112 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 DUXAA6NLW8 204 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 TP53I11O14683 189 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 SCN2BO60939 215 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 ABCB7O75027 752 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 KCNH1O95259 989 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 KRT75O95678 551 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 WDPCPO95876 746 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 HMGN2P05204 90 aaKnown RBP9.32□□□□□ -0.92
USP3-216ENST00000559873 SNRPB2P08579 225 aaKnown RBP9.32□□□□□ -0.92
USP3-216ENST00000559873 ALOX5P09917 674 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 CD46P15529 392 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 NAGAP17050 411 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 PPIBP23284 216 aaKnown RBP9.32□□□□□ -0.92
USP3-216ENST00000559873 MAGEA8P43361 318 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 KHKP50053 298 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 KLRB1Q12918 225 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 DUSP8Q13202 625 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 UBAP2LQ14157 1087 aaKnown RBP9.32□□□□□ -0.92
USP3-216ENST00000559873 LASP1Q14847 261 aaKnown RBP9.32□□□□□ -0.92
USP3-216ENST00000559873 OR1C1Q15619 314 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 MMEL1Q495T6 779 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 COQ5Q5HYK3 327 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 MFSD12Q6NUT3 480 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 CDC73Q6P1J9 531 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 DNAJC14Q6Y2X3 702 aaPredicted RBP9.32□□□□□ -0.92
USP3-216ENST00000559873 RTL4Q6ZR62 310 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 GK5Q6ZS86 529 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 ZNF621Q6ZSS3 439 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 PIGWQ7Z7B1 504 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 FUNDC1Q8IVP5 155 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 SLC34A3Q8N130 599 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 COX18Q8N8Q8 333 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 GOLM1Q8NBJ4 401 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 TMEM178AQ8NBL3 297 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 FAM98AQ8NCA5 519 aaKnown RBP9.32□□□□□ -0.92
USP3-216ENST00000559873 CCDC197Q8NCU1 140 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 OR5AK3PQ8NH89 298 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 ADAMTS15Q8TE58 950 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 HAS2Q92819 552 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 ADIPOR1Q96A54 375 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 VPS33AQ96AX1 596 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 SPACA9Q96E40 222 aaPredicted RBP9.32□□□□□ -0.92
USP3-216ENST00000559873 SGCZQ96LD1 299 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 CCT8L2Q96SF2 557 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 STACQ99469 402 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 SLC35A5Q9BS91 424 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 ACTRT3Q9BYD9 372 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 NMUR2Q9GZQ4 415 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 TIMMDC1Q9NPL8 285 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 ZNF71Q9NQZ8 489 aaPredicted RBP9.32□□□□□ -0.92
USP3-216ENST00000559873 LRFN1Q9P244 771 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 CORO2BQ9UQ03 480 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 GPR55Q9Y2T6 319 aaPredicted RBP9.32□□□□□ -0.92
USP3-216ENST00000559873 ATRXP46100 2492 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 PIEZO2Q9H5I5 2752 aa9.32□□□□□ -0.92
USP3-216ENST00000559873 ITPR1Q14643 2758 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 KMT2BQ9UMN6 2715 aaPredicted RBP9.31□□□□□ -0.92
USP3-216ENST00000559873 A0A096LPI6 279 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 EIF4E1BA6NMX2 242 aaKnown RBP9.31□□□□□ -0.92
USP3-216ENST00000559873 NDUFAB1O14561 156 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 TO15178 435 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 HS6ST1O60243 411 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 SLC25A12O75746 678 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 AK1P00568 194 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 FBXO45P0C2W1 286 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 ZCCHC18P0CG32 403 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 CAPN3P20807 821 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 IL12BP29460 328 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 SOX18P35713 384 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 SOX3P41225 446 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 ZFP36L2P47974 494 aaKnown RBP9.31□□□□□ -0.92
USP3-216ENST00000559873 TNFSF10P50591 281 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 PHC1P78364 1004 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 HPCAP84074 193 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 KLF10Q13118 480 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 STX5Q13190 355 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 GAB1Q13480 694 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 TUBA3CQ13748 450 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 INAQ16352 499 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 NNATQ16517 81 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 DECR1Q16698 335 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 CYP27C1Q4G0S4 372 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 PIGGQ5H8A4 983 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 TUBA3EQ6PEY2 450 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 MTDHQ86UE4 582 aaKnown RBP9.31□□□□□ -0.92
USP3-216ENST00000559873 SLC44A2Q8IWA5 706 aaPredicted RBP9.31□□□□□ -0.92
USP3-216ENST00000559873 TEX19Q8NA77 164 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 PCYOX1LQ8NBM8 494 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 FAM13CQ8NE31 585 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 RP9Q8TA86 221 aaKnown RBP9.31□□□□□ -0.92
USP3-216ENST00000559873 GPR151Q8TDV0 419 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 NUDT8Q8WV74 236 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 SLC9A6Q92581 669 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 PNPLA2Q96AD5 504 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 NEURL3Q96EH8 262 aa9.31□□□□□ -0.92
USP3-216ENST00000559873 NPAS2Q99743 824 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms