RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ZIC2O95409 532 aaPredicted RBP12.12□□□□□ -0.47
LDLR-207ENST00000558013 LGI1O95970 557 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 MC3RP41968 323 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 PRDX1Q06830 199 aaKnown RBP12.12□□□□□ -0.47
LDLR-207ENST00000558013 OCLNQ16625 522 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 TOR1AIP1Q5JTV8 583 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 ATAD3CQ5T2N8 411 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 MEDAGQ5VYS4 303 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 FAM131AQ6UXB0 335 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 ACOT4Q8N9L9 421 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 TMEM145Q8NBT3 493 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 OR4F15Q8NGB8 312 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 OR9A2Q8NGT5 310 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 SMG7Q92540 1137 aaKnown RBP12.12□□□□□ -0.47
LDLR-207ENST00000558013 RNFT2Q96EX2 444 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 POLDIP3Q9BY77 421 aaKnown RBP12.12□□□□□ -0.47
LDLR-207ENST00000558013 SRRQ9GZT4 340 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 CRISPLD2Q9H0B8 497 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 SEMA4GQ9NTN9 838 aa12.12□□□□□ -0.47
LDLR-207ENST00000558013 NUP210Q8TEM1 1887 aaPredicted RBP12.12□□□□□ -0.47
LDLR-207ENST00000558013 SLC2A10O95528 541 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 FGF19O95750 216 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 ENDOUP21128 410 aaKnown RBP12.11□□□□□ -0.47
LDLR-207ENST00000558013 CXCR2P25025 360 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 TIE1P35590 1138 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 EFNB1P98172 346 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 CDK5Q00535 292 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 ALDH6A1Q02252 535 aaKnown RBP12.11□□□□□ -0.47
LDLR-207ENST00000558013 MLLT11Q13015 90 aaPredicted RBP12.11□□□□□ -0.47
LDLR-207ENST00000558013 CRTC2Q53ET0 693 aaPredicted RBP12.11□□□□□ -0.47
LDLR-207ENST00000558013 C1orf53Q5VUE5 145 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 KRT73Q86Y46 540 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 NKAIN4Q8IVV8 208 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 UBQLNLQ8IYU4 475 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 BBS1Q8NFJ9 593 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 OR52P1PQ8NH57 321 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 ZFPM2Q8WW38 1151 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 CAMK1GQ96NX5 476 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 SLC6A17Q9H1V8 727 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 C3orf14Q9HBI5 128 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 SLC6A20Q9NP91 592 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 ACSS1Q9NUB1 689 aaPredicted RBP12.11□□□□□ -0.47
LDLR-207ENST00000558013 GON4LQ3T8J9 2241 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 AIFM1O95831 613 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 PPP2R1BP30154 601 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 FABP5Q01469 135 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 RPA4Q13156 261 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 GPR50Q13585 617 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 C1DQ13901 141 aaKnown RBP12.11□□□□□ -0.47
LDLR-207ENST00000558013 C1orf94Q6P1W5 598 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 ADAMTSL4Q6UY14 1074 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 SLC25A46Q96AG3 418 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 MS4A6EQ96DS6 147 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 CHFRQ96EP1 664 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 DIRAS2Q96HU8 199 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 DIMT1Q9UNQ2 313 aaKnown RBP12.11□□□□□ -0.47
LDLR-207ENST00000558013 SLC9A8Q9Y2E8 581 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 MDC1Q14676 2089 aaKnown RBP12.11□□□□□ -0.47
LDLR-207ENST00000558013 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.11□□□□□ -0.47
LDLR-207ENST00000558013 A0A1W2PP55 124 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 SHISA3A0PJX4 238 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 DNAJB6O75190 326 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 RAB36O95755 333 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 TSPAN19P0C672 248 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 FUT1P19526 365 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 MAT2AP31153 395 aaKnown RBP12.11□□□□□ -0.47
LDLR-207ENST00000558013 GPR4P46093 362 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 RACK1P63244 317 aaKnown RBP12.11□□□□□ -0.47
LDLR-207ENST00000558013 RUNX1T1Q06455 604 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 SLC9A5Q14940 896 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 ARHGAP19Q14CB8 494 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 TYW3Q6IPR3 259 aaKnown RBP12.11□□□□□ -0.47
LDLR-207ENST00000558013 COL26A1Q96A83 441 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 HDHD5Q9BXW7 423 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 CERS4Q9HA82 394 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 PRDM7Q9NQW5 492 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 ZSCAN32Q9NX65 697 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 CMAHPQ9Y471 501 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 ASB4Q9Y574 426 aa12.11□□□□□ -0.47
LDLR-207ENST00000558013 TRBV23OR9-2A0A075B6M9 112 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 CENPVL1A0A0U1RR11 272 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 FAM183AA6NL82 134 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 TBX19O60806 448 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 FGBP02675 491 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 LIMS3P0CW19 117 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 LIMS4P0CW20 117 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 GNSP15586 552 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 TAS2R41P59536 307 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 IRF4Q15306 451 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 ZNF311Q5JNZ3 666 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 C6orf132Q5T0Z8 1188 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 AGBL4Q5VU57 503 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 OR4N5Q8IXE1 308 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 KCT2Q8NC54 265 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 FLCNQ8NFG4 579 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 OTULINQ96BN8 352 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 QRFPRQ96P65 431 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 CCDC32Q9BV29 185 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 KATNB1Q9BVA0 655 aa12.1□□□□□ -0.47
LDLR-207ENST00000558013 DDX28Q9NUL7 540 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms