RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 WDR87Q6ZQQ6 2873 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 A0A1W2PQ72 361 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 MPZL2O60487 215 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 HCN1O60741 890 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 CDK1P06493 297 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 SMSP52788 366 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 VSX2P58304 361 aaPredicted RBP14.03□□□□□ -0.16
CUX1-215ENST00000556210 ZNF776Q68DI1 518 aaPredicted RBP14.03□□□□□ -0.16
CUX1-215ENST00000556210 KRCC1Q9NPI7 259 aaPredicted RBP14.03□□□□□ -0.16
CUX1-215ENST00000556210 SBF1O95248 1867 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 OR2A25A4D2G3 310 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 LINC01553A4QN01 128 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 LBX1P52954 281 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 PIP5KL1Q5T9C9 394 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 METTL2BQ6P1Q9 378 aaKnown RBP14.03□□□□□ -0.16
CUX1-215ENST00000556210 TECPR1Q7Z6L1 1165 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 SYNPOQ8N3V7 929 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 EPYCQ99645 322 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 SLIRPQ9GZT3 109 aaKnown RBP14.03□□□□□ -0.16
CUX1-215ENST00000556210 HRASLS2Q9NWW9 162 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 STOML2Q9UJZ1 356 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 PCDHGA2Q9Y5H1 932 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 NOX1Q9Y5S8 564 aa14.03□□□□□ -0.16
CUX1-215ENST00000556210 J3QLW9 94 aa14.02□□□□□ -0.16
CUX1-215ENST00000556210 GREM1O60565 184 aa14.02□□□□□ -0.16
CUX1-215ENST00000556210 GYPBP06028 91 aa14.02□□□□□ -0.16
CUX1-215ENST00000556210 GNSP15586 552 aa14.02□□□□□ -0.16
CUX1-215ENST00000556210 SPNP16150 400 aa14.02□□□□□ -0.16
CUX1-215ENST00000556210 ZNF19P17023 458 aa14.02□□□□□ -0.16
CUX1-215ENST00000556210 ZNF10P21506 573 aaPredicted RBP14.02□□□□□ -0.16
CUX1-215ENST00000556210 TAS2R38P59533 333 aa14.02□□□□□ -0.16
CUX1-215ENST00000556210 GNG2P59768 71 aa14.02□□□□□ -0.16
CUX1-215ENST00000556210 RAE1P78406 368 aaKnown RBP14.02□□□□□ -0.16
CUX1-215ENST00000556210 LUZP2Q86TE4 346 aa14.02□□□□□ -0.16
CUX1-215ENST00000556210 NRSN1Q8IZ57 195 aa14.02□□□□□ -0.16
CUX1-215ENST00000556210 OR6T1Q8NGN1 323 aa14.02□□□□□ -0.16
CUX1-215ENST00000556210 YIPF6Q96EC8 236 aa14.02□□□□□ -0.16
CUX1-215ENST00000556210 C11orf24Q96F05 449 aaPredicted RBP14.02□□□□□ -0.16
CUX1-215ENST00000556210 GAL3ST4Q96RP7 486 aa14.02□□□□□ -0.16
CUX1-215ENST00000556210 HTTP42858 3142 aa14.02□□□□□ -0.16
CUX1-215ENST00000556210 PDCD11Q14690 1871 aaKnown RBP14.02□□□□□ -0.16
CUX1-215ENST00000556210 DAPL1A0PJW8 107 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 B3GALT2O43825 422 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 PRKNO60260 465 aaPredicted RBP14.02□□□□□ -0.17
CUX1-215ENST00000556210 LSM11P83369 360 aaKnown RBP eCLIP14.02□□□□□ -0.176e-6■■■□□ 16.2
CUX1-215ENST00000556210 AMIGO1Q86WK6 493 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 SLC7A13Q8TCU3 470 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 SETD7Q8WTS6 366 aaKnown RBP14.02□□□□□ -0.17
CUX1-215ENST00000556210 PATE1Q8WXA2 126 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 PMEPA1Q969W9 287 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 TM4SF18Q96CE8 201 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 HRASLS5Q96KN8 279 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 WACQ9BTA9 647 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 MYNNQ9NPC7 610 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 KLHL42Q9P2K6 505 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 SERGEFQ9UGK8 458 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 MGAT4BQ9UQ53 548 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 ANKRD34BA5PLL1 514 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 OLFM2O95897 454 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 PRKAR1AP10644 381 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 PCMT1P22061 227 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 ACVR1BP36896 505 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 COX10Q12887 443 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 ATAD3CQ5T2N8 411 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 SLC27A4Q6P1M0 643 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 LILRA6Q6PI73 481 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 GDPD3Q7L5L3 318 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 KLBQ86Z14 1044 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 OR8H1Q8NGG4 311 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 OR8J1Q8NGP2 316 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 OR52P1PQ8NH57 321 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 CCL4L1Q8NHW4 92 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 PIGKQ92643 395 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 UFD1Q92890 307 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 FRMD6Q96NE9 622 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 PAK6Q9NQU5 681 aaPredicted RBP14.02□□□□□ -0.17
CUX1-215ENST00000556210 SPHK1Q9NYA1 384 aa14.02□□□□□ -0.17
CUX1-215ENST00000556210 YARS2Q9Y2Z4 477 aaKnown RBP14.02□□□□□ -0.17
CUX1-215ENST00000556210 PSMD9O00233 223 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 ARAFP10398 606 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 OSMP13725 252 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 MYL9P24844 172 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 TNFSF8P32971 234 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 ZNHIT3Q15649 155 aaPredicted RBP14.01□□□□□ -0.17
CUX1-215ENST00000556210 ITPRIPL2Q3MIP1 535 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 ATP6V1C2Q8NEY4 427 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 OR4F15Q8NGB8 312 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 KCTD7Q96MP8 289 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 LMAN2LQ9H0V9 348 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 GLIPR2Q9H4G4 154 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 ACER3Q9NUN7 267 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 USP36Q9P275 1121 aaKnown RBP14.01□□□□□ -0.17
CUX1-215ENST00000556210 NDRG4Q9ULP0 352 aaKnown RBP14.01□□□□□ -0.17
CUX1-215ENST00000556210 KCNE1BA0A087WTH5 132 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 ARHGAP33O14559 1287 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 NTN1O95631 604 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 GCGRP47871 477 aa14.01□□□□□ -0.17
CUX1-215ENST00000556210 RACK1P63244 317 aaKnown RBP14.01□□□□□ -0.17
CUX1-215ENST00000556210 TBCEQ15813 527 aaPredicted RBP14.01□□□□□ -0.17
CUX1-215ENST00000556210 ARTNQ5T4W7 220 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms