RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 SOX11P35716 441 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 MVDP53602 400 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 EEFSECP57772 596 aaKnown RBP10.13□□□□□ -0.79
SHMT2-218ENST00000555213 ACTR3P61158 418 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 HBA1P69905 142 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 MAP4K2Q12851 820 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 HSPB3Q12988 150 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 MFAP5Q13361 173 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 RIPK1Q13546 671 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 CCNIQ14094 377 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 MEP1AQ16819 746 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 C6orf10Q5SRN2 563 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 ANXA8L1Q5VT79 327 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 HLA-DQA1Q5Y7H0 255 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 CLEC4FQ8N1N0 589 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 ARHGAP24Q8N264 748 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 APCDD1LQ8NCL9 501 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 LSM14AQ8ND56 463 aaKnown RBP10.13□□□□□ -0.79
SHMT2-218ENST00000555213 VPS37AQ8NEZ2 397 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 OR8J3Q8NGG0 315 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 DNAJB8Q8NHS0 232 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 ZNF721Q8TF20 911 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 AURKBQ96GD4 344 aaPredicted RBP10.13□□□□□ -0.79
SHMT2-218ENST00000555213 ABHD17AQ96GS6 310 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 AMDHD1Q96NU7 426 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 GAL3ST4Q96RP7 486 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 SMAD5Q99717 465 aaKnown RBP10.13□□□□□ -0.79
SHMT2-218ENST00000555213 NUDT9Q9BW91 350 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 SEMA4CQ9C0C4 833 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 PCDHAC1Q9H158 963 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 NEUROD4Q9HD90 331 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 ACSS1Q9NUB1 689 aaPredicted RBP10.13□□□□□ -0.79
SHMT2-218ENST00000555213 DDX18Q9NVP1 670 aaKnown RBP10.13□□□□□ -0.79
SHMT2-218ENST00000555213 ADA2Q9NZK5 511 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 MAT2BQ9NZL9 334 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 PRODH2Q9UF12 536 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 PCSK5Q92824 1860 aa10.13□□□□□ -0.79
SHMT2-218ENST00000555213 CCDC88CQ9P219 2028 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 A0A1W2PRB8 838 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 CDK2AP1O14519 115 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 RFXANKO14593 260 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 ATXN7O15265 892 aaPredicted RBP10.12□□□□□ -0.79
SHMT2-218ENST00000555213 DPM1O60762 260 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 DNAJA2O60884 412 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 IFI6P09912 130 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 GPX2P18283 190 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 GSK3BP49841 420 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 GPR143P51810 404 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 MANFP55145 182 aaKnown RBP10.12□□□□□ -0.79
SHMT2-218ENST00000555213 MTPNP58546 118 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 RNF4P78317 190 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 ARG2P78540 354 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 LIPEQ05469 1076 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 FUT7Q11130 342 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 TRIM25Q14258 630 aaKnown RBP10.12□□□□□ -0.79
SHMT2-218ENST00000555213 MLC1Q15049 377 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 LTB4RQ15722 352 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 PRICKLE4Q2TBC4 344 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 SPATS1Q496A3 300 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 ZNF628Q5EBL2 1059 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 ACER2Q5QJU3 275 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 TMEM107Q6UX40 140 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 DGAT2L6Q6ZPD8 337 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 LINC00696Q6ZRV3 163 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 ASB18Q6ZVZ8 466 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 RPS19BP1Q86WX3 136 aaKnown RBP10.12□□□□□ -0.79
SHMT2-218ENST00000555213 ZADH2Q8N4Q0 377 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 ADCY4Q8NFM4 1077 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 PSMA8Q8TAA3 256 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 SUN3Q8TAQ9 357 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 NUBPLQ8TB37 319 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 ZFP90Q8TF47 636 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 LMF1Q96S06 567 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 GLIPR2Q9H4G4 154 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 ZNF552Q9H707 407 aaPredicted RBP10.12□□□□□ -0.79
SHMT2-218ENST00000555213 KAT8Q9H7Z6 458 aaKnown RBP10.12□□□□□ -0.79
SHMT2-218ENST00000555213 RMND5AQ9H871 391 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 SIRT3Q9NTG7 399 aaPredicted RBP10.12□□□□□ -0.79
SHMT2-218ENST00000555213 RYDENQ9NUL5 291 aaKnown RBP10.12□□□□□ -0.79
SHMT2-218ENST00000555213 BCAP29Q9UHQ4 241 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 PCDHGB4Q9UN71 923 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 TP53TG5Q9Y2B4 290 aa10.12□□□□□ -0.79
SHMT2-218ENST00000555213 A0A087WV62 115 aa10.11□□□□□ -0.79
SHMT2-218ENST00000555213 CLIC1O00299 241 aa10.11□□□□□ -0.79
SHMT2-218ENST00000555213 PLOD3O60568 738 aa10.11□□□□□ -0.79
SHMT2-218ENST00000555213 SSTR4P31391 388 aa10.11□□□□□ -0.79
SHMT2-218ENST00000555213 MC3RP41968 323 aa10.11□□□□□ -0.79
SHMT2-218ENST00000555213 SLC37A1P57057 533 aa10.11□□□□□ -0.79
SHMT2-218ENST00000555213 PSPHP78330 225 aa10.11□□□□□ -0.79
SHMT2-218ENST00000555213 MRPS35P82673 323 aaKnown RBP10.11□□□□□ -0.79
SHMT2-218ENST00000555213 PRR5P85299 388 aa10.11□□□□□ -0.79
SHMT2-218ENST00000555213 LRRC74AQ0VAA2 488 aa10.11□□□□□ -0.79
SHMT2-218ENST00000555213 ZNF155Q12901 538 aaPredicted RBP10.11□□□□□ -0.79
SHMT2-218ENST00000555213 TRAP1Q12931 704 aaKnown RBP10.11□□□□□ -0.79
SHMT2-218ENST00000555213 GAB1Q13480 694 aa10.11□□□□□ -0.79
SHMT2-218ENST00000555213 ADRM1Q16186 407 aa10.11□□□□□ -0.79
SHMT2-218ENST00000555213 SPDYE7PQ495Y7 208 aa10.11□□□□□ -0.79
SHMT2-218ENST00000555213 SAMD4BQ5PRF9 694 aaKnown RBP10.11□□□□□ -0.79
SHMT2-218ENST00000555213 FBXW10Q5XX13 1052 aa10.11□□□□□ -0.79
SHMT2-218ENST00000555213 B3GNTL1Q67FW5 361 aaPredicted RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms