RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SH2D5Q6ZV89 423 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 LRRC70Q7Z2Q7 622 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 PLCZ1Q86YW0 608 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 ZNF611Q8N823 705 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 ZNF610Q8N9Z0 462 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 SPC24Q8NBT2 197 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 TRIM58Q8NG06 486 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 GRK7Q8WTQ7 553 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 FIG4Q92562 907 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 OMA1Q96E52 524 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 ZNF845Q96IR2 970 aaPredicted RBP11.5□□□□□ -0.57
SCAF11-208ENST00000546534 MCMBPQ9BTE3 642 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 KLHL4Q9C0H6 718 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 DDX31Q9H8H2 851 aaKnown RBP11.5□□□□□ -0.57
SCAF11-208ENST00000546534 CAB39LQ9H9S4 337 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 WDR41Q9HAD4 459 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 EHD3Q9NZN3 535 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 ASIC3Q9UHC3 531 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 FBXL2Q9UKC9 423 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 TEX264Q9Y6I9 313 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 CUBNO60494 3623 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 HEATR5AQ86XA9 2040 aa11.5□□□□□ -0.57
SCAF11-208ENST00000546534 FRG2CA6NGY1 282 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 HS3ST1O14792 307 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 PHGDHO43175 533 aaKnown RBP11.49□□□□□ -0.57
SCAF11-208ENST00000546534 EMC8O43402 210 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 CD5LO43866 347 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 GBAP04062 536 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 CD1DP15813 335 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 TBXA2RP21731 343 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 TCEA1P23193 301 aaKnown RBP11.49□□□□□ -0.57
SCAF11-208ENST00000546534 PIK3R1P27986 724 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 PIK3CBP42338 1070 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 ARFIP1P53367 373 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 SLC12A2P55011 1212 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 PLCXD2Q0VAA5 305 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 FRG1Q14331 258 aaKnown RBP11.49□□□□□ -0.57
SCAF11-208ENST00000546534 PPP1R7Q15435 360 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 BCL2A1Q16548 175 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 OR52E8Q6IFG1 317 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 GRHL2Q6ISB3 625 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 CYP20A1Q6UW02 462 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 CHMP1BQ7LBR1 199 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 UBQLNLQ8IYU4 475 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 PDIK1LQ8N165 341 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 OR7G1Q8NGA0 311 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 EXT2Q93063 718 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 CAVIN3Q969G5 261 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 RHOJQ9H4E5 214 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 ZFAND3Q9H8U3 227 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 PSD3Q9NYI0 1048 aa11.49□□□□□ -0.57
SCAF11-208ENST00000546534 MTO1Q9Y2Z2 717 aaKnown RBP11.49□□□□□ -0.57
SCAF11-208ENST00000546534 EXPH5Q8NEV8 1989 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 ABCA1O95477 2261 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 ZIC3O60481 467 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 PIAS1O75925 651 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 S100BP04271 92 aaPredicted RBP11.48□□□□□ -0.57
SCAF11-208ENST00000546534 CD8BP10966 210 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 CPMP14384 443 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 NT5EP21589 574 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 PTX3P26022 381 aaPredicted RBP11.48□□□□□ -0.57
SCAF11-208ENST00000546534 IVDP26440 423 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 FNTAP49354 379 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 XKP51811 444 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 B3GALT5-AS1P59052 145 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 ATP6V0D1P61421 351 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 HMGCS1Q01581 520 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 POU4F1Q01851 419 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 CHRFAM7AQ494W8 412 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 C6orf163Q5TEZ5 329 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 OR5M10Q6IEU7 315 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 ZNF662Q6ZS27 426 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 MYLK4Q86YV6 388 aaPredicted RBP11.48□□□□□ -0.57
SCAF11-208ENST00000546534 ANKMY2Q8IV38 441 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 DEPDC4Q8N2C3 294 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 OR4K14Q8NGD5 310 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 LRRC39Q96DD0 335 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 LCORQ96JN0 433 aaPredicted RBP11.48□□□□□ -0.57
SCAF11-208ENST00000546534 ITPAQ9BY32 194 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 MOCS1Q9NZB8 636 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 OPTCQ9UBM4 332 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 LAMP3Q9UQV4 416 aa11.48□□□□□ -0.57
SCAF11-208ENST00000546534 B4DXG7 233 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 H0YC42 278 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 K7EPI3 171 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 PGRMC1O00264 195 aaKnown RBP11.47□□□□□ -0.57
SCAF11-208ENST00000546534 ACOX3O15254 700 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 TPD52P55327 224 aaPredicted RBP11.47□□□□□ -0.57
SCAF11-208ENST00000546534 CLDN15P56746 228 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 RPS4XP62701 263 aaKnown RBP11.47□□□□□ -0.57
SCAF11-208ENST00000546534 MGAT2Q10469 447 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 EXOSC7Q15024 291 aaKnown RBP11.47□□□□□ -0.57
SCAF11-208ENST00000546534 EXOC3L2Q2M3D2 409 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 FAM111BQ6SJ93 734 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 ZBED6CLQ96FA7 236 aaPredicted RBP11.47□□□□□ -0.57
SCAF11-208ENST00000546534 PLPPR2Q96GM1 343 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 PBKQ96KB5 322 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 NAP1L3Q99457 506 aaPredicted RBP11.47□□□□□ -0.57
SCAF11-208ENST00000546534 TMEM204Q9BSN7 226 aa11.47□□□□□ -0.57
SCAF11-208ENST00000546534 RNF122Q9H9V4 155 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms