RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 ASIC3Q9UHC3 531 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 UTP11Q9Y3A2 253 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 MAD1L1Q9Y6D9 718 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 KCNE2Q9Y6J6 123 aa13.76□□□□□ -0.21
CLSTN3-216ENST00000545663 TMEM89A2RUT3 159 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 DPRXA6NFQ7 191 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 TMPRSS2O15393 492 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 DLX3O60479 287 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 H2AFYO75367 372 aaKnown RBP13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 SH3BGRLO75368 114 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 CDKN2DP55273 166 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 AP1S2P56377 157 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 PON3Q15166 354 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 NNATQ16517 81 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 BCL2A1Q16548 175 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 C18orf63Q68DL7 685 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 LRRC8EQ6NSJ5 796 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 SLC30A6Q6NXT4 461 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 PROX1Q92786 737 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 C3orf49Q96BT1 292 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 SOX7Q9BT81 388 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 SORBS1Q9BX66 1292 aaKnown RBP13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 GRIP2Q9C0E4 1043 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 XAB2Q9HCS7 855 aaKnown RBP13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 EHD3Q9NZN3 535 aa13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 ZNF490Q9ULM2 529 aaPredicted RBP13.75□□□□□ -0.21
CLSTN3-216ENST00000545663 A0A1W2PS29 197 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 TCRBV7S3A2A0A539 114 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 ANKDD1BA6NHY2 528 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 C17orf51A8MQB3 221 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 RGS9O75916 674 aaPredicted RBP13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 MLNP12872 115 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 SRD5A2P31213 254 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 SRP14P37108 136 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 GDF5P43026 501 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 TMED10P49755 219 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 NEK2P51955 445 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 CALCOCO2Q13137 446 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 THOC5Q13769 683 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 FGFBP1Q14512 234 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 SPRED3Q2MJR0 410 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 HLA-DQA1Q5Y7H0 255 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 C8orf74Q6P047 294 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 PPIL6Q8IXY8 311 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 ST13P4Q8IZP2 240 aaPredicted RBP13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 MMGT1Q8N4V1 131 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 GPATCH11Q8N954 259 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 MCUQ8NE86 351 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 TTLQ8NG68 377 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 RPF2Q9H7B2 306 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 ZNF696Q9H7X3 374 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 FOLH1BQ9HBA9 442 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 KLRF1Q9NZS2 232 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 WHRNQ9P202 907 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 ARMCX1Q9P291 453 aa13.74□□□□□ -0.21
CLSTN3-216ENST00000545663 EXPH5Q8NEV8 1989 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 SAP18O00422 153 aaKnown RBP13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 SEC14L5O43304 696 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 PRAMEF4O60810 478 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 CDH16O75309 829 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 TNFRSF21O75509 655 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 PPM1BO75688 479 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 AIFM1O95831 613 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 RHOXF2BP0C7M4 288 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 SLC6A8P48029 635 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 KCNC1P48547 511 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 TERF1P54274 439 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 NRG3P56975 720 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 CAV1Q03135 178 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 MORF4L2Q15014 288 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 RAB35Q15286 201 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 TAB1Q15750 504 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 PRAMEF9Q5VWM5 478 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 PLCZ1Q86YW0 608 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 KCNC2Q96PR1 638 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 ERP44Q9BS26 406 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 TRIM54Q9BYV2 358 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 NXF5Q9H1B4 397 aaKnown RBP13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 RYDENQ9NUL5 291 aaKnown RBP13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 GPR52Q9Y2T5 361 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 COMMD10Q9Y6G5 202 aa13.73□□□□□ -0.21
CLSTN3-216ENST00000545663 PABPN1LA6NDY0 278 aaKnown RBP13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 GLOD5A6NK44 160 aa13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 EFCAB8A8MWE9 144 aa13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 SHISA9B4DS77 424 aa13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 DNALI1O14645 258 aaPredicted RBP13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 NTN1O95631 604 aa13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 CT62P0C5K7 136 aa13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 KRT15P19012 456 aa13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 HIST1H1TP22492 207 aaPredicted RBP13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 VPS41P49754 854 aa13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 CLDN20P56880 219 aa13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 IRF9Q00978 393 aa13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 C2orf54Q08AI8 447 aa13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 TRIP13Q15645 432 aaPredicted RBP13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 RBM20Q5T481 1227 aaKnown RBP13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 C11orf71Q6IPW1 123 aa13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 SEZ6L2Q6UXD5 910 aa13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 ZNF615Q8N8J6 731 aa13.72□□□□□ -0.21
CLSTN3-216ENST00000545663 OR5M1Q8NGP8 315 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms