RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 FAF1Q9UNN5 650 aaPredicted RBP15.85■□□□□ 0.13
LIG1-204ENST00000542460 YARS2Q9Y2Z4 477 aaKnown RBP15.85■□□□□ 0.13
LIG1-204ENST00000542460 PCDHB14Q9Y5E9 798 aa15.85■□□□□ 0.13
LIG1-204ENST00000542460 ITGA10O75578 1167 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 OR2J2O76002 312 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 SOX30O94993 753 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 KRT75O95678 551 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 NR0B1P51843 470 aaKnown RBP15.84■□□□□ 0.13
LIG1-204ENST00000542460 LASP1Q14847 261 aaKnown RBP15.84■□□□□ 0.13
LIG1-204ENST00000542460 LINC00303Q3SY05 128 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 PIGGQ5H8A4 983 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 SAXO2Q658L1 398 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 C16orf47Q6ZP98 133 aaPredicted RBP15.84■□□□□ 0.13
LIG1-204ENST00000542460 TAGAPQ8N103 731 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 SLC15A4Q8N697 577 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 POU5F2Q8N7G0 328 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 PCYOX1LQ8NBM8 494 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 ZFP90Q8TF47 636 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 HOXB13Q92826 284 aaPredicted RBP15.84■□□□□ 0.13
LIG1-204ENST00000542460 HSPBAP1Q96EW2 488 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 C16orf58Q96GQ5 468 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 SMAD5Q99717 465 aaKnown RBP15.84■□□□□ 0.13
LIG1-204ENST00000542460 LMF2Q9BU23 707 aaKnown RBP15.84■□□□□ 0.13
LIG1-204ENST00000542460 ACTRT3Q9BYD9 372 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 NXF5Q9H1B4 397 aaKnown RBP15.84■□□□□ 0.13
LIG1-204ENST00000542460 EPS8L2Q9H6S3 715 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 ABI3Q9P2A4 366 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 MAP10Q9P2G4 905 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 SMG1Q96Q15 3661 aaKnown RBP15.84■□□□□ 0.13
LIG1-204ENST00000542460 FRG2CA6NGY1 282 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 CDK2AP1O14519 115 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 ACOX3O15254 700 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 MAN1A2O60476 641 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 NPPAP01160 153 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 KRT16P08779 473 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 CT45A8P0DMV1 189 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 CT45A9P0DMV2 189 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 HOXB9P17482 250 aaPredicted RBP15.84■□□□□ 0.13
LIG1-204ENST00000542460 MAP3K8P41279 467 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 NRG3P56975 720 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 PSPHP78330 225 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 PSG6Q00889 435 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 MFAP5Q13361 173 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 NFYCQ13952 458 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 GTDC1Q4AE62 458 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 CT45A2Q5DJT8 189 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 REP15Q6BDI9 236 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 DLEU7Q6UYE1 221 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 LINC00696Q6ZRV3 163 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 DHDDSQ86SQ9 333 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 SLC22A8Q8TCC7 542 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 SLC9A6Q92581 669 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 TTC9Q92623 222 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 TPT1P8Q9HAU6 139 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 TUBD1Q9UJT1 453 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 PCDHGB7Q9Y5F8 929 aa15.84■□□□□ 0.13
LIG1-204ENST00000542460 CACNA1GO43497 2377 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 MGAQ8IWI9 3026 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 MRASO14807 208 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 ALOX5P09917 674 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 MATN1P21941 496 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 SSR4P51571 173 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 CORO7P57737 925 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 EXOSC6Q5RKV6 272 aaKnown RBP15.83■□□□□ 0.12
LIG1-204ENST00000542460 CDC73Q6P1J9 531 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 IGFL2Q6UWQ7 119 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 ANGPTL8Q6UXH0 198 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 WDR53Q7Z5U6 358 aaPredicted RBP15.83■□□□□ 0.12
LIG1-204ENST00000542460 SLC44A2Q8IWA5 706 aaPredicted RBP15.83■□□□□ 0.12
LIG1-204ENST00000542460 BEST3Q8N1M1 668 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 SLC16A11Q8NCK7 471 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 MIPOL1Q8TD10 442 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 ADAMTS15Q8TE58 950 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 JADE3Q92613 823 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 ABHD17AQ96GS6 310 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 SLC35G5Q96KT7 338 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 RASL10BQ96S79 203 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 YIPF4Q9BSR8 244 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 ADNPQ9H2P0 1102 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 Q9N2J8 555 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 GIN1Q9NXP7 522 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 SLC25A37Q9NYZ2 338 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 VAPAQ9P0L0 249 aa15.83■□□□□ 0.12
LIG1-204ENST00000542460 TRBV5-3A0A0A0MS03 114 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 DUXAA6NLW8 204 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 CLIC1O00299 241 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 TO15178 435 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 NKX2-2O95096 273 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 ACP2P11117 423 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 TRHRP34981 398 aaPredicted RBP15.82■□□□□ 0.12
LIG1-204ENST00000542460 TXNL4AP83876 142 aaKnown RBP15.82■□□□□ 0.12
LIG1-204ENST00000542460 KCNAB2Q13303 367 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 NNATQ16517 81 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 TRMT5Q32P41 509 aaKnown RBP15.82■□□□□ 0.12
LIG1-204ENST00000542460 OPN5Q6U736 354 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 NPSR1Q6W5P4 371 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 RNF130Q86XS8 419 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 MSRB3Q8IXL7 192 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 TMEM156Q8N614 296 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 GPR151Q8TDV0 419 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms