RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 NEUROD4Q9HD90 331 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 MAN2C1Q9NTJ4 1040 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 SEMA4GQ9NTN9 838 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 A8MV72 311 aaPredicted RBP15.89■□□□□ 0.13
USP28-208ENST00000540438 DVL2O14641 736 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 CSO75390 466 aaKnown RBP15.89■□□□□ 0.13
USP28-208ENST00000540438 PRG2P13727 222 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 PORP16435 677 aaPredicted RBP15.89■□□□□ 0.13
USP28-208ENST00000540438 PPP2R1BP30154 601 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 STXBP1P61764 594 aaKnown RBP15.89■□□□□ 0.13
USP28-208ENST00000540438 TBCEQ15813 527 aaPredicted RBP15.89■□□□□ 0.13
USP28-208ENST00000540438 PLAG1Q6DJT9 500 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 TYW3Q6IPR3 259 aaKnown RBP15.89■□□□□ 0.13
USP28-208ENST00000540438 FIGNL1Q6PIW4 674 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 MTSS1LQ765P7 747 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 KIF18BQ86Y91 864 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 OR8H2Q8N162 312 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 PARP16Q8N5Y8 322 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 SRMSQ9H3Y6 488 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 MED20Q9H944 212 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 PELI2Q9HAT8 420 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 POLMQ9NP87 494 aaPredicted RBP15.89■□□□□ 0.13
USP28-208ENST00000540438 A0A087WUU8 490 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 PRSS38A1L453 326 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 CACNB4O00305 520 aaPredicted RBP15.89■□□□□ 0.13
USP28-208ENST00000540438 ETV5P41161 510 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 KIR2DL1P43626 348 aaPredicted RBP15.89■□□□□ 0.13
USP28-208ENST00000540438 ETV1P50549 477 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 RPS21P63220 83 aaKnown RBP15.89■□□□□ 0.13
USP28-208ENST00000540438 RPA4Q13156 261 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 EXOSC7Q15024 291 aaKnown RBP15.89■□□□□ 0.13
USP28-208ENST00000540438 AMIGO1Q86WK6 493 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 Q8N9G6 341 aaPredicted RBP15.89■□□□□ 0.13
USP28-208ENST00000540438 BBS1Q8NFJ9 593 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 OR7G2Q8NG99 324 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 SIPA1Q96FS4 1042 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 OPALINQ96PE5 141 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 ACSL5Q9ULC5 683 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 CSNK1G3Q9Y6M4 447 aa15.89■□□□□ 0.13
USP28-208ENST00000540438 OR6C74A6NCV1 312 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 C5orf67F2Z3F1 127 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 C5AR1P21730 350 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 SDHBP21912 280 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 ZNF776Q68DI1 518 aaPredicted RBP15.88■□□□□ 0.13
USP28-208ENST00000540438 C22orf42Q6IC83 251 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 USP30Q70CQ3 517 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 CAMKK1Q8N5S9 505 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 METTL27Q8N6F8 245 aaPredicted RBP15.88■□□□□ 0.13
USP28-208ENST00000540438 DENND6BQ8NEG7 585 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 OR8D4Q8NGM9 314 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 HMGB4Q8WW32 186 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 ABCB9Q9NP78 766 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 A4GALTQ9NPC4 353 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 EHD3Q9NZN3 535 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 METTL15A6NJ78 407 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 CBFA2T3O75081 653 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 LAMP2P13473 410 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 PKLRP30613 574 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 OXA1LQ15070 435 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 HSDL2Q6YN16 418 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 ZNF730Q6ZMV8 503 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 RRM2BQ7LG56 351 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 VN1R4Q7Z5H5 301 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 RAB42Q8N4Z0 105 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 OR4F15Q8NGB8 312 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 TMEM255BQ8WV15 326 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 RLN3Q8WXF3 142 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 RAB7BQ96AH8 199 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 WDR12Q9GZL7 423 aaKnown RBP15.88■□□□□ 0.13
USP28-208ENST00000540438 RACGAP1Q9H0H5 632 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 HHATLQ9HCP6 504 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 TIGARQ9NQ88 270 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 SLC13A4Q9UKG4 626 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 MAPRE3Q9UPY8 281 aa15.88■□□□□ 0.13
USP28-208ENST00000540438 GNSP15586 552 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 PXNP49023 591 aaPredicted RBP15.87■□□□□ 0.13
USP28-208ENST00000540438 ABI3BPQ7Z7G0 1075 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 CELF2-AS1Q8N7Q2 184 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 CHST2Q9Y4C5 530 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 SPIN1Q9Y657 262 aaPredicted RBP15.87■□□□□ 0.13
USP28-208ENST00000540438 FAM170BA6NMN3 283 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 NCR1O76036 304 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 ERGP11308 486 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 S100A5P33763 92 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 HMGA2P52926 109 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 SLC16A1P53985 500 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 TPTEP56180 551 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 ERV3-1Q14264 604 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 FLYWCH1Q4VC44 716 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 KRT73Q86Y46 540 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 TMEM52Q8NDY8 209 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 SLC35A4Q96G79 324 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 QRFPRQ96P65 431 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 ASPNQ9BXN1 380 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 GDE1Q9NZC3 331 aa15.87■□□□□ 0.13
USP28-208ENST00000540438 A0A1W2PQF6 199 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 TFECO14948 347 aaPredicted RBP15.86■□□□□ 0.13
USP28-208ENST00000540438 GMFGO60234 142 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 KDM1AO60341 852 aa15.86■□□□□ 0.13
USP28-208ENST00000540438 SEMA3DO95025 777 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms