RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 CDK9P50750 372 aaKnown RBP16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 DIO3P55073 304 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 DCAF7P61962 342 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 OCRLQ01968 901 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 C4orf17Q53FE4 359 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 WDR53Q7Z5U6 358 aaPredicted RBP16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 RIMKLAQ8IXN7 391 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 GHDCQ8N2G8 530 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 TMEM251Q8N6I4 163 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 OR4N2Q8NGD1 307 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 DIO2Q92813 273 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 HGDQ93099 445 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 NTNG2Q96CW9 530 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 MTERF3Q96E29 417 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 MANSC1Q9H8J5 431 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 MEAF6Q9HAF1 191 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 IL1RL2Q9HB29 575 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 THAP1Q9NVV9 213 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 TAS2R9Q9NYW1 312 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 ZNF835Q9Y2P0 537 aa16.8■□□□□ 0.28
SNRPA1-203ENST00000540017 LRRC3CA6NJW4 275 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 CAPN14A8MX76 684 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 TP53I11O14683 189 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 SLC19A2O60779 497 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 UGT2B11O75310 529 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 PDE9AO76083 593 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 SLITRK5O94991 958 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 LDLRP01130 860 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 CELA3AP09093 270 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 RFPL3SP0C7P2 107 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 NAGAP17050 411 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 HPCAL1P37235 193 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 CASP3P42574 277 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 MAGEA5P43359 124 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 TMED10P49755 219 aaKnown RBP16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 KCNJ2P63252 427 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 PSG6Q00889 435 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 PLCXD2Q0VAA5 305 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 SMU1Q2TAY7 513 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 SLC44A2Q8IWA5 706 aaPredicted RBP16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 SLC34A3Q8N130 599 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 RAB3IL1Q8TBN0 382 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 SSC4DQ8WTU2 575 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 TMBIM1Q969X1 311 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 ZBED6CLQ96FA7 236 aaPredicted RBP16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 NODALQ96S42 347 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 ZDHHC11Q9H8X9 412 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 VIPAS39Q9H9C1 493 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 PLSCR2Q9NRY7 297 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 ACSS1Q9NUB1 689 aaPredicted RBP16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 DDX18Q9NVP1 670 aaKnown RBP16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 ASIC5Q9NY37 505 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 MARCOQ9UEW3 520 aaPredicted RBP16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 EIF3LQ9Y262 564 aaKnown RBP16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 DOPEY2Q9Y3R5 2298 aa16.79■□□□□ 0.28
SNRPA1-203ENST00000540017 ASH1LQ9NR48 2969 aaKnown RBP16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 NINQ8N4C6 2090 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 TRGV8A0A0C4DH27 118 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 A0A1B0GTH9 108 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 ANKRD33BA6NCL7 494 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 WIPF3A6NGB9 483 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 SDHDO14521 159 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 CDC40O60508 579 aaKnown RBP eCLIP16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 COQ9O75208 318 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 TRIM3O75382 744 aaPredicted RBP16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 KITP10721 976 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 MANFP55145 182 aaKnown RBP16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 ZNF155Q12901 538 aaPredicted RBP16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 MAD2L1Q13257 205 aaPredicted RBP16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 C3AR1Q16581 482 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 HYAL4Q2M3T9 481 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 FNDC7Q5VTL7 733 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 ATG16L1Q676U5 607 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 BNC2Q6ZN30 1099 aaPredicted RBP16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 Q6ZPB1 254 aaPredicted RBP16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 LARP4Q71RC2 724 aaKnown RBP eCLIP16.78■□□□□ 0.285e-6■□□□□ 10.3
SNRPA1-203ENST00000540017 R3HCC1LQ7Z5L2 792 aaKnown RBP16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 FJX1Q86VR8 437 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 SLC22A16Q86VW1 577 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 SPPL2CQ8IUH8 684 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 WDR75Q8IWA0 830 aaKnown RBP16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 ZNF75CPQ92670 426 aaPredicted RBP16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 RELTQ969Z4 430 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 COQ8BQ96D53 544 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 RILPQ96NA2 401 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 SECISBP2Q96T21 854 aaKnown RBP16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 DOHHQ9BU89 302 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 ANGPTL4Q9BY76 406 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 NOP53Q9NZM5 478 aaKnown RBP16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 SH3BGRL2Q9UJC5 107 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 TINAGQ9UJW2 476 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 LIPGQ9Y5X9 500 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 LRRK2Q5S007 2527 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 NCKAP5O14513 1909 aa16.78■□□□□ 0.28
SNRPA1-203ENST00000540017 TSPAN2O60636 221 aa16.77■□□□□ 0.28
SNRPA1-203ENST00000540017 REM1O75628 298 aa16.77■□□□□ 0.28
SNRPA1-203ENST00000540017 IFI6P09912 130 aa16.77■□□□□ 0.28
SNRPA1-203ENST00000540017 PRPS1L1P21108 318 aa16.77■□□□□ 0.28
SNRPA1-203ENST00000540017 GPC1P35052 558 aa16.77■□□□□ 0.28
SNRPA1-203ENST00000540017 PTGDSP41222 190 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms