RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 PTGER1P34995 402 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 RAB15P59190 212 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 MGAT2Q10469 447 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 LRRC36Q1X8D7 754 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 TRMT12Q53H54 448 aaKnown RBP19.78■□□□□ 0.76
VPS28-212ENST00000530836 FAM111BQ6SJ93 734 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 CDRT4Q8N9R6 151 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 OR5D16Q8NGK9 328 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 FAM110BQ8TC76 370 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 RIT1Q92963 219 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 C9orf16Q9BUW7 83 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 DDA1Q9BW61 102 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 BTBD2Q9BX70 525 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 CXorf21Q9HAI6 301 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 ASCL3Q9NQ33 180 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 LANCL2Q9NS86 450 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 PCDHGA3Q9Y5H0 932 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 WDFY3Q8IZQ1 3526 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 KIF26BQ2KJY2 2108 aa19.78■□□□□ 0.76
VPS28-212ENST00000530836 A0A0G2JPF8 293 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 CDRT15L2A8MXV6 281 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 HNRNPCL2B2RXH8 293 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 HNRNPCL3B7ZW38 293 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 SCRG1O75711 98 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 CDC123O75794 336 aaPredicted RBP19.77■□□□□ 0.76
VPS28-212ENST00000530836 PRSS23O95084 383 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 SEMG1P04279 462 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 HNRNPCL4P0DMR1 293 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 CRYBA2P53672 197 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 ERV3-1Q14264 604 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 NKG7Q16617 165 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 DCAF12Q5T6F0 453 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 TMEM164Q5U3C3 297 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 IZUMO2Q6UXV1 221 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 PIWIL3Q7Z3Z3 882 aaKnown RBP19.77■□□□□ 0.76
VPS28-212ENST00000530836 ARMC8Q8IUR7 673 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 ZDHHC21Q8IVQ6 265 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 PACRGLQ8N7B6 248 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 C16orf58Q96GQ5 468 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 TRNT1Q96Q11 434 aaKnown RBP19.77■□□□□ 0.76
VPS28-212ENST00000530836 TGIF2Q9GZN2 237 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 APMAPQ9HDC9 416 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 EQTNQ9NQ60 294 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 ZNF639Q9UID6 485 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 SPTBP11277 2137 aa19.77■□□□□ 0.76
VPS28-212ENST00000530836 C9orf172C9J069 976 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 CST1P01037 141 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 FABP3P05413 133 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 ETS2P15036 469 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 SOX18P35713 384 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 BTG2P78543 158 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 COL9A2Q14055 689 aaPredicted RBP19.76■□□□□ 0.75
VPS28-212ENST00000530836 PRAMEF17Q5VTA0 474 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 SLC44A2Q8IWA5 706 aaPredicted RBP19.76■□□□□ 0.75
VPS28-212ENST00000530836 SHISA5Q8N114 240 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 ICA1LQ8NDH6 482 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 PMEPA1Q969W9 287 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 TAMM41Q96BW9 452 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 TPD52L3Q96J77 140 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 STACQ99469 402 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 CTRCQ99895 268 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 TREX2Q9BQ50 279 aaPredicted RBP19.76■□□□□ 0.75
VPS28-212ENST00000530836 ZPBPQ9BS86 351 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 PIGUQ9H490 435 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 DUSP22Q9NRW4 184 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 PADI2Q9Y2J8 665 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 CLDN16Q9Y5I7 305 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 DYRK3O43781 588 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 ONECUT2O95948 504 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 MAOAP21397 527 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 HSPA13P48723 471 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 IFI44LQ53G44 452 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 GALNT10Q86SR1 603 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 PTCHD1Q96NR3 888 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 YIPF4Q9BSR8 244 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 ADAP2Q9NPF8 381 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 THSD1Q9NS62 852 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 DKK4Q9UBT3 224 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 B3GALT1Q9Y5Z6 326 aa19.76■□□□□ 0.75
VPS28-212ENST00000530836 TTC36A6NLP5 189 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 GNGT2O14610 69 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 DPM1O60762 260 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 AK1P00568 194 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 ALOX5P09917 674 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 SLC5A2P31639 672 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 RORAP35398 523 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 KCNJ10P78508 379 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 MAPK11Q15759 364 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 SYPL1Q16563 259 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 CMPK2Q5EBM0 449 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 EXOSC6Q5RKV6 272 aaKnown RBP19.75■□□□□ 0.75
VPS28-212ENST00000530836 C1orf189Q5VU69 101 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 HEPHL1Q6MZM0 1159 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 PWWP2BQ6NUJ5 590 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 ZBTB49Q6ZSB9 765 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 C16orf62Q7Z3J2 963 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 ZDHHC19Q8WVZ1 309 aaPredicted RBP19.75■□□□□ 0.75
VPS28-212ENST00000530836 GEMIN6Q8WXD5 167 aaKnown RBP19.75■□□□□ 0.75
VPS28-212ENST00000530836 CLIP3Q96DZ5 547 aa19.75■□□□□ 0.75
VPS28-212ENST00000530836 C14orf105Q9NVL8 296 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms