RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 A8MUA0 341 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 HNRNPCL2B2RXH8 293 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 HNRNPCL3B7ZW38 293 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 HRKO00198 91 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 PRAMEF2O60811 474 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 SERPINB7O75635 380 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 LDLRP01130 860 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 ALBP02768 609 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 HEXBP07686 556 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 HNRNPCL4P0DMR1 293 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 SSTR4P31391 388 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 CLDN6P56747 220 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 DUSP8Q13202 625 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 ELAVL1Q15717 326 aaKnown RBP19.58■□□□□ 0.73
VPS28-208ENST00000527797 ATP6AP1Q15904 470 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 OGFRL1Q5TC84 451 aaPredicted RBP19.58■□□□□ 0.73
VPS28-208ENST00000527797 MLIPQ5VWP3 458 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 HEPHL1Q6MZM0 1159 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 DHRS13Q6UX07 377 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 OR7G1Q8NGA0 311 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 FKBP10Q96AY3 582 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 CENPNQ96H22 339 aaPredicted RBP19.58■□□□□ 0.73
VPS28-208ENST00000527797 TACO1Q9BSH4 297 aaKnown RBP19.58■□□□□ 0.73
VPS28-208ENST00000527797 SLC26A1Q9H2B4 701 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 CLCA3PQ9Y6N3 262 aa19.58■□□□□ 0.73
VPS28-208ENST00000527797 VPS13AQ96RL7 3174 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 VSTM2BA6NLU5 285 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 A8MVJ9 347 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 CLOCKO15516 846 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 H6PDO95479 791 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 CHRM4P08173 479 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 PEX2P28328 305 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 EMDP50402 254 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 EFNA3P52797 238 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 HPCAP84074 193 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 ZNHIT3Q15649 155 aaPredicted RBP19.58■□□□□ 0.72
VPS28-208ENST00000527797 LRRC36Q1X8D7 754 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 SHISA6Q6ZSJ9 500 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 ZDHHC21Q8IVQ6 265 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 DEFB124Q8NES8 71 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 GPR151Q8TDV0 419 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 PMEPA1Q969W9 287 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 TAAR9Q96RI9 348 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 ZPBPQ9BS86 351 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 SPATA5L1Q9BVQ7 753 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 BTBD2Q9BX70 525 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 OR10A5Q9H207 317 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 RUBCNLQ9H714 662 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 FOLH1BQ9HBA9 442 aa19.58■□□□□ 0.72
VPS28-208ENST00000527797 HEMK1Q9Y5R4 338 aaPredicted RBP19.58■□□□□ 0.72
VPS28-208ENST00000527797 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.57■□□□□ 0.72
VPS28-208ENST00000527797 TMEM229AB2RXF0 380 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 DEAF1O75398 565 aaPredicted RBP19.57■□□□□ 0.72
VPS28-208ENST00000527797 MFN2O95140 757 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 SEMG1P04279 462 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 FABP3P05413 133 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 JMJD7P0C870 316 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 ETS2P15036 469 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 ETV5P41161 510 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 MAP3K8P41279 467 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 KCNJ10P78508 379 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 ARHGAP11BQ3KRB8 267 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 IFI44LQ53G44 452 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 LCN10Q6JVE6 187 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 ARMC8Q8IUR7 673 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 CATSPER1Q8NEC5 780 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 RASSF5Q8WWW0 418 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 HOXB13Q92826 284 aaPredicted RBP19.57■□□□□ 0.72
VPS28-208ENST00000527797 SENP5Q96HI0 755 aaPredicted RBP19.57■□□□□ 0.72
VPS28-208ENST00000527797 COL21A1Q96P44 957 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 LMF2Q9BU23 707 aaKnown RBP19.57■□□□□ 0.72
VPS28-208ENST00000527797 BDH2Q9BUT1 245 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 KLHL4Q9C0H6 718 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 SOX17Q9H6I2 414 aaPredicted RBP19.57■□□□□ 0.72
VPS28-208ENST00000527797 IL1RAPQ9NPH3 570 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 PRODH2Q9UF12 536 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 GPN3Q9UHW5 284 aaPredicted RBP19.57■□□□□ 0.72
VPS28-208ENST00000527797 BAG5Q9UL15 447 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 B3GALT1Q9Y5Z6 326 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 GPC6Q9Y625 555 aaPredicted RBP19.57■□□□□ 0.72
VPS28-208ENST00000527797 SCN2AQ99250 2005 aa19.57■□□□□ 0.72
VPS28-208ENST00000527797 PEX1O43933 1283 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 NKX2-2O95096 273 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 AK1P00568 194 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 CST1P01037 141 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 GABRA3P34903 492 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 MAGEA2P43356 314 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 EIF3IQ13347 325 aaKnown RBP19.56■□□□□ 0.72
VPS28-208ENST00000527797 GRAMD1BQ3KR37 738 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 HES3Q5TGS1 186 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 COX18Q8N8Q8 333 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 SMYD1Q8NB12 490 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 ICA1LQ8NDH6 482 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 OR14A16Q8NHC5 309 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 DAZLQ92904 295 aaKnown RBP19.56■□□□□ 0.72
VPS28-208ENST00000527797 MR1Q95460 341 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 EME1Q96AY2 570 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 FBXL20Q96IG2 436 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 ART5Q96L15 291 aa19.56■□□□□ 0.72
VPS28-208ENST00000527797 SEC14L3Q9UDX4 400 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms