RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 TRMT12Q53H54 448 aaKnown RBP11.27□□□□□ -0.61
CPSF3-204ENST00000489403 SGO1Q5FBB7 561 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 LETMD1Q6P1Q0 360 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 ZNF572Q7Z3I7 529 aaPredicted RBP11.27□□□□□ -0.61
CPSF3-204ENST00000489403 MILR1Q7Z6M3 343 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 WDSUB1Q8N9V3 476 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 OR14L1PQ8NHC6 308 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 RDH11Q8TC12 318 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 TM4SF18Q96CE8 201 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 KLHL29Q96CT2 875 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 CNRIP1Q96F85 164 aaPredicted RBP11.27□□□□□ -0.61
CPSF3-204ENST00000489403 ZNF681Q96N22 645 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 YIPF4Q9BSR8 244 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 G6PC3Q9BUM1 346 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 SFXN3Q9BWM7 321 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 ACSS3Q9H6R3 686 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 GALNT8Q9NY28 637 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 NINJ2Q9NZG7 142 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 TMCO1Q9UM00 188 aa11.27□□□□□ -0.61
CPSF3-204ENST00000489403 FRG2CA6NGY1 282 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 PPP6CO00743 305 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 TO15178 435 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 SMIM24O75264 130 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 CBR3O75828 277 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 TSPAN8P19075 237 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 CD53P19397 219 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 CSNK2A2P19784 350 aaPredicted RBP11.26□□□□□ -0.61
CPSF3-204ENST00000489403 DRD5P21918 477 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 HOXC12P31275 282 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 CASQ1P31415 396 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 GCKP35557 465 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 PPICP45877 212 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 LHX2P50458 406 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 DCAF7P61962 342 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 MRPS35P82673 323 aaKnown RBP11.26□□□□□ -0.61
CPSF3-204ENST00000489403 HMGCS1Q01581 520 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 ENPP6Q6UWR7 440 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 IFNEQ86WN2 208 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 KRTAP1-3Q8IUG1 177 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 TRIM42Q8IWZ5 723 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 GCNT2Q8N0V5 402 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 ZNF483Q8TF39 744 aaPredicted RBP11.26□□□□□ -0.61
CPSF3-204ENST00000489403 SELENOMQ8WWX9 145 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 TMBIM1Q969X1 311 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 INTS12Q96CB8 462 aaKnown RBP11.26□□□□□ -0.61
CPSF3-204ENST00000489403 ZFP3Q96NJ6 502 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 DACH2Q96NX9 599 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 UCN2Q96RP3 112 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 HBEGFQ99075 208 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 ANKRA2Q9H9E1 313 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 BRF2Q9HAW0 419 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 CLCF1Q9UBD9 225 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 PRODH2Q9UF12 536 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 ZNF225Q9UK10 706 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 FBXL2Q9UKC9 423 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 WIF1Q9Y5W5 379 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 MED12LQ86YW9 2145 aa11.26□□□□□ -0.61
CPSF3-204ENST00000489403 SH3D21A4FU49 640 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 OR6C70A6NIJ9 312 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 B4DXG7 233 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 OTCP00480 354 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 SBK3P0C264 359 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 DRD2P14416 443 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 SRD5A2P31213 254 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 CPA2P48052 419 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 ALDH9A1P49189 494 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 STARP49675 285 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 CDH13P55290 713 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 TRA2BP62995 288 aaKnown RBP11.25□□□□□ -0.61
CPSF3-204ENST00000489403 TSNAXIP1Q2TAA8 658 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 ZNF628Q5EBL2 1059 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 C8orf74Q6P047 294 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 SYT10Q6XYQ8 523 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 PLCZ1Q86YW0 608 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 C1orf52Q8N6N3 182 aaKnown RBP11.25□□□□□ -0.61
CPSF3-204ENST00000489403 WNT2BQ93097 391 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 TMCO6Q96DC7 493 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 SLC35A4Q96G79 324 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 COL21A1Q96P44 957 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 TM9SF2Q99805 663 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 SMR3AQ99954 134 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 LRRC1Q9BTT6 524 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 FAIM2Q9BWQ8 316 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 FUT8Q9BYC5 575 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 CDC42EP4Q9H3Q1 356 aaKnown RBP11.25□□□□□ -0.61
CPSF3-204ENST00000489403 TAS2R10Q9NYW0 307 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 HEY2Q9UBP5 337 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 TRPS1Q9UHF7 1281 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 UTS2RQ9UKP6 389 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 PSME2Q9UL46 239 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 SNX6Q9UNH7 406 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 GPR55Q9Y2T6 319 aaPredicted RBP11.25□□□□□ -0.61
CPSF3-204ENST00000489403 ACANP16112 2415 aa11.25□□□□□ -0.61
CPSF3-204ENST00000489403 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 A8MT66 165 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 A8MXE2 369 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 PLOD2O00469 737 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 HCRTR2O43614 444 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 TSPAN2O60636 221 aa11.24□□□□□ -0.61
CPSF3-204ENST00000489403 NME6O75414 186 aaPredicted RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms