RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 RCAN2Q14206 197 aa18.22■□□□□ 0.51
LIME1-205ENST00000480139 INAQ16352 499 aa18.22■□□□□ 0.51
LIME1-205ENST00000480139 ZNF791Q3KP31 576 aaPredicted RBP18.22■□□□□ 0.51
LIME1-205ENST00000480139 PLEKHN1Q494U1 663 aaPredicted RBP18.22■□□□□ 0.51
LIME1-205ENST00000480139 CT45A2Q5DJT8 189 aa18.22■□□□□ 0.51
LIME1-205ENST00000480139 SPINK14Q6IE38 97 aa18.22■□□□□ 0.51
LIME1-205ENST00000480139 RPUSD3Q6P087 351 aaKnown RBP18.22■□□□□ 0.51
LIME1-205ENST00000480139 ZCCHC12Q6PEW1 402 aa18.22■□□□□ 0.51
LIME1-205ENST00000480139 Q8NA96 180 aa18.22■□□□□ 0.51
LIME1-205ENST00000480139 GOLM1Q8NBJ4 401 aa18.22■□□□□ 0.51
LIME1-205ENST00000480139 OR56A1Q8NGH5 318 aa18.22■□□□□ 0.51
LIME1-205ENST00000480139 OR9I1Q8NGQ6 314 aa18.22■□□□□ 0.51
LIME1-205ENST00000480139 GIMAP5Q96F15 307 aa18.22■□□□□ 0.51
LIME1-205ENST00000480139 SCMH1Q96GD3 660 aa18.22■□□□□ 0.51
LIME1-205ENST00000480139 MAGED4Q96JG8 741 aa18.22■□□□□ 0.51
LIME1-205ENST00000480139 OR52E6Q96RD3 313 aa18.22■□□□□ 0.51
LIME1-205ENST00000480139 ZCCHC3Q9NUD5 404 aaKnown RBP18.22■□□□□ 0.51
LIME1-205ENST00000480139 RALYQ9UKM9 306 aaKnown RBP18.22■□□□□ 0.51
LIME1-205ENST00000480139 PCDHGA10Q9Y5H3 936 aa18.22■□□□□ 0.51
LIME1-205ENST00000480139 C9JVG2 144 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 SLC25A12O75746 678 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 NCF2P19878 526 aaPredicted RBP18.21■□□□□ 0.51
LIME1-205ENST00000480139 ABCD3P28288 659 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 CCT3P49368 545 aaKnown RBP18.21■□□□□ 0.51
LIME1-205ENST00000480139 PSG6Q00889 435 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 ZNHIT3Q15649 155 aaPredicted RBP18.21■□□□□ 0.51
LIME1-205ENST00000480139 NTRK2Q16620 822 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 VPS26BQ4G0F5 336 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 ZNF766Q5HY98 468 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 BHLHB9Q6PI77 547 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 BLOC1S3Q6QNY0 202 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 RTL4Q6ZR62 310 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 ZNF843Q8N446 348 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 CPSF7Q8N684 471 aaKnown RBP18.21■□□□□ 0.51
LIME1-205ENST00000480139 CDRT4Q8N9R6 151 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 TMEM178AQ8NBL3 297 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 OR4A15Q8NGL6 344 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 C10orf82Q8WW14 230 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 TMEM125Q96AQ2 219 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 C5orf34Q96MH7 638 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 NSRP1Q9H0G5 558 aaKnown RBP18.21■□□□□ 0.51
LIME1-205ENST00000480139 ERVK-11Q9UQG0 969 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 SNX8Q9Y5X2 465 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 NPFFR2Q9Y5X5 522 aa18.21■□□□□ 0.51
LIME1-205ENST00000480139 SMG1Q96Q15 3661 aaKnown RBP18.2■□□□□ 0.5
LIME1-205ENST00000480139 GMNCA6NCL1 334 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 NME2P1O60361 137 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 PRB1P04280 392 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 SP1P08047 785 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 ABCB1P08183 1280 aaPredicted RBP18.2■□□□□ 0.5
LIME1-205ENST00000480139 NME2P22392 152 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 PRIM2P49643 509 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 SEC24CP53992 1094 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 CORO7P57737 925 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 GNGT1P63211 74 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 MAPKAPK3Q16644 382 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 SPDYE7PQ495Y7 208 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 EXOSC6Q5RKV6 272 aaKnown RBP18.2■□□□□ 0.5
LIME1-205ENST00000480139 SLC25A25Q6KCM7 469 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 MFSD12Q6NUT3 480 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 IL20RBQ6UXL0 311 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 NPSR1Q6W5P4 371 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 ANKRD46Q86W74 232 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 FUNDC1Q8IVP5 155 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 RMND5AQ9H871 391 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 SH2D2AQ9NP31 389 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 TIMMDC1Q9NPL8 285 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 GIN1Q9NXP7 522 aa18.2■□□□□ 0.5
LIME1-205ENST00000480139 NUP214P35658 2090 aaPredicted RBP18.19■□□□□ 0.5
LIME1-205ENST00000480139 B8ZZF3 427 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 SUV39H1O43463 412 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 NME6O75414 186 aaPredicted RBP18.19■□□□□ 0.5
LIME1-205ENST00000480139 PPM1BO75688 479 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 SOX30O94993 753 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 HMGN2P05204 90 aaKnown RBP18.19■□□□□ 0.5
LIME1-205ENST00000480139 KRT16P08779 473 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 UQCRC2P22695 453 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 ST13P50502 369 aaKnown RBP18.19■□□□□ 0.5
LIME1-205ENST00000480139 PRKAG1P54619 331 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 KCNK10P57789 538 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 NNATQ16517 81 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 CYP27C1Q4G0S4 372 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 TIGD2Q4W5G0 525 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 SZRD1Q7Z422 152 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 SLC34A3Q8N130 599 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 TRIML2Q8N7C3 387 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 PSD4Q8NDX1 1056 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 PANX1Q96RD7 426 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 SECISBP2Q96T21 854 aaKnown RBP18.19■□□□□ 0.5
LIME1-205ENST00000480139 Q9N2J8 555 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 SERHLQ9NQF3 203 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 GPATCH2Q9NW75 528 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 CCDC167Q9P0B6 97 aa18.19■□□□□ 0.5
LIME1-205ENST00000480139 KLF13Q9Y2Y9 288 aaPredicted RBP18.19■□□□□ 0.5
LIME1-205ENST00000480139 RNF103-CHMP3A0A140T963 221 aa18.18■□□□□ 0.5
LIME1-205ENST00000480139 ABCB7O75027 752 aa18.18■□□□□ 0.5
LIME1-205ENST00000480139 NKX2-2O95096 273 aa18.18■□□□□ 0.5
LIME1-205ENST00000480139 CPSF4O95639 269 aaKnown RBP18.18■□□□□ 0.5
LIME1-205ENST00000480139 DRD4P21917 467 aa18.18■□□□□ 0.5
LIME1-205ENST00000480139 SOAT1P35610 550 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms