RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 C1orf61Q13536 156 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 TOMM20Q15388 145 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 TRAM1Q15629 374 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 ZCCHC12Q6PEW1 402 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 MBOAT4Q96T53 435 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 LGR4Q9BXB1 951 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 VN1R3Q9BXE9 311 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 GPN3Q9UHW5 284 aaPredicted RBP13.82□□□□□ -0.2
HDAC6-220ENST00000477528 ZNF670-ZNF695F2Z2N8 137 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 APBB3O95704 486 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 SEMA4FO95754 770 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 RABIFP47224 123 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 SLC9A3P48764 834 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 RPE65Q16518 533 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 LRIT3Q3SXY7 679 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 PODNL1Q6PEZ8 512 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 DCDC5Q6ZRR9 648 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 NANOGNBQ7Z5D8 188 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 GPALPP1Q8IXQ4 340 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 CDRT4Q8N9R6 151 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 OR6Q1Q8NGQ2 317 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 TM4SF18Q96CE8 201 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 PSORS1C1Q9UIG5 152 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 PPIL1Q9Y3C6 166 aa13.82□□□□□ -0.2
HDAC6-220ENST00000477528 K7ESM1 405 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 SLC19A2O60779 497 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 TRIM3O75382 744 aaPredicted RBP13.81□□□□□ -0.2
HDAC6-220ENST00000477528 CSTAP01040 98 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 WNT4P56705 351 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 HYAL2Q12891 473 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 ASB18Q6ZVZ8 466 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 DOK4Q8TEW6 326 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 FRMD6Q96NE9 622 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 ZNF559Q9BR84 538 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 OBP2AQ9NY56 170 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 PRAMEF33A0A0G2JMD5 474 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 PRSS38A1L453 326 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 PRAMEF10O60809 474 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 CD2P06729 351 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 LBX1P52954 281 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 TIAL1Q01085 375 aaKnown RBP eCLIP13.81□□□□□ -0.23e-9■□□□□ 10.5
HDAC6-220ENST00000477528 KLHL24Q6TFL4 600 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 SLC29A4Q7RTT9 530 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 NUP54Q7Z3B4 507 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 ENTHD1Q8IYW4 607 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 TOR1AIP2Q8NFQ8 470 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 EID2BQ96D98 161 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 ADAD1Q96M93 576 aaKnown RBP13.81□□□□□ -0.2
HDAC6-220ENST00000477528 CPNE5Q9HCH3 593 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 TEX10Q9NXF1 929 aaPredicted RBP13.81□□□□□ -0.2
HDAC6-220ENST00000477528 ACTR10Q9NZ32 417 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 CNIH4Q9P003 139 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 PRODHO43272 600 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 PPM1BO75688 479 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 CD160O95971 181 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 PTTG1O95997 202 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 B3GALT4O96024 378 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 GNSP15586 552 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 DRD1P21728 446 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 NRG3P56975 720 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 CLDN2P57739 230 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 CAMK1Q14012 370 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 CCBE1Q6UXH8 406 aaPredicted RBP13.81□□□□□ -0.2
HDAC6-220ENST00000477528 RNF165Q6ZSG1 346 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 LINGO2Q7L985 606 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 LAS2Q8IYD9 372 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 ZNF676Q8N7Q3 588 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 COQ10AQ96MF6 247 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 ERMAPQ96PL5 475 aaPredicted RBP13.81□□□□□ -0.2
HDAC6-220ENST00000477528 ZDHHC5Q9C0B5 715 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 GABARAPL1Q9H0R8 117 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 A4GALTQ9NPC4 353 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 WWP2O00308 870 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 CDC123O75794 336 aaPredicted RBP13.81□□□□□ -0.2
HDAC6-220ENST00000477528 GASTP01350 101 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 MRPL3P09001 348 aaKnown RBP13.81□□□□□ -0.2
HDAC6-220ENST00000477528 ZNF24P17028 368 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 C6orf132Q5T0Z8 1188 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 LIN54Q6MZP7 749 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 PRR23CQ6ZRP0 262 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 SLC25A36Q96CQ1 311 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 GPR174Q9BXC1 333 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 BRD7Q9NPI1 651 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 GNG8Q9UK08 70 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 PCDHGA4Q9Y5G9 962 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 MYO9BQ13459 2157 aa13.81□□□□□ -0.2
HDAC6-220ENST00000477528 TTC3P53804 2025 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 IGLV3-16A0A075B6K0 115 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 TRBV4-1A0A0J9YWV2 114 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 BLOC1S5-TXNDC5H3BN57 136 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 PLD2O14939 933 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 FRS3O43559 492 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 GIMD1P0DJR0 217 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 ZNF823P16415 610 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 GPR143P51810 404 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 ZNF542PQ5EBM4 170 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 FAAH2Q6GMR7 532 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 ASTLQ6HA08 431 aaPredicted RBP13.8□□□□□ -0.2
HDAC6-220ENST00000477528 KLBQ86Z14 1044 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 PELOQ9BRX2 385 aaKnown RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms