RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 CBLCQ9ULV8 474 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SNX6Q9UNH7 406 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PLLPQ9Y342 182 aa11.16□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SERTM1A2A2V5 107 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 OR6C70A6NIJ9 312 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MANBAO00462 879 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 GNB5O14775 395 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 DLX3O60479 287 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ERAL1O75616 437 aaKnown RBP11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CBR3O75828 277 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 OR4F21O95013 312 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SNRPAP09012 282 aaKnown RBP11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CHN1P15882 459 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PCSK2P16519 638 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TSPAN8P19075 237 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CTSSP25774 331 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 UQCRC1P31930 480 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MASP1P48740 699 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 GAS1P54826 345 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 GFRA1P56159 465 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 LTB4RQ15722 352 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ZNF628Q5EBL2 1059 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TCHHL1Q5QJ38 904 aaPredicted RBP11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ZNF678Q5SXM1 525 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 FAM180BQ6P0A1 224 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 GALNT18Q6P9A2 607 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ANGPTL8Q6UXH0 198 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 YRDCQ86U90 279 aaKnown RBP11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CDC20BQ86Y33 519 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 C1orf52Q8N6N3 182 aaKnown RBP11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 KIF18AQ8NI77 898 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MBD6Q96DN6 1003 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SLC35A4Q96G79 324 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 BTBD9Q96Q07 612 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 ZNF382Q96SR6 550 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 FMO2Q99518 471 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 BRINP2Q9C0B6 783 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CLEC4MQ9H2X3 399 aaPredicted RBP11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 GALNT9Q9HCQ5 603 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 NMRK1Q9NWW6 199 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 SIRT5Q9NXA8 310 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 TMEM216Q9P0N5 145 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 PRODH2Q9UF12 536 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MCM8Q9UJA3 840 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 CAMK2AQ9UQM7 478 aa11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 MRPS18CQ9Y3D5 142 aaKnown RBP11.15□□□□□ -0.62
MSH5-SAPCD1-205ENST00000476085 C2orf72A6NCS6 295 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 FRG2CA6NGY1 282 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 POC1B-GALNT4F8VUJ3 575 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TSPAN2O60636 221 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 RCBTB2O95199 551 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 EPXP11678 715 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 DRD2P14416 443 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 IMPDH1P20839 514 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 OPRM1P35372 400 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 DEKP35659 375 aaKnown RBP11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ARL1P40616 181 aaPredicted RBP11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 MRPS35P82673 323 aaKnown RBP11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 SORDQ00796 357 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 HMGCS1Q01581 520 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 CSTF3Q12996 717 aaKnown RBP11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 NNATQ16517 81 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 GLE1Q53GS7 698 aaKnown RBP11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 C6orf163Q5TEZ5 329 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TAOK1Q7L7X3 1001 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TGIF2LYQ8IUE0 185 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 CCDC116Q8IYX3 515 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 C9orf106Q8NAJ2 232 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 OR52R1Q8NGF1 315 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 KLHL29Q96CT2 875 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 VSTM2LQ96N03 204 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TRIB1Q96RU8 372 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 HBEGFQ99075 208 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 OSBPL11Q9BXB4 747 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ACPTQ9BZG2 426 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 METTL7AQ9H8H3 244 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 DLL4Q9NR61 685 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 BCAP29Q9UHQ4 241 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ARID1AO14497 2285 aa11.14□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 A0A087WUV0 522 aaPredicted RBP11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PRAMEF25A6NGN4 478 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ZIC3O60481 467 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PLOD3O60568 738 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 BCAS2O75934 225 aaPredicted RBP11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 ABHD2P08910 425 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 CD99P14209 185 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 KRT15P19012 456 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 LHX2P50458 406 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PRKAA2P54646 552 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PLCXD2Q0VAA5 305 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 FOXF2Q12947 444 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 RASA2Q15283 850 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PRSS53Q2L4Q9 553 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 NPSR1Q6W5P4 371 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 LCA5Q86VQ0 697 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 KIF18BQ86Y91 864 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 PLCZ1Q86YW0 608 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 TRIM42Q8IWZ5 723 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 CDYL2Q8N8U2 506 aa11.13□□□□□ -0.63
MSH5-SAPCD1-205ENST00000476085 GBP7Q8N8V2 638 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms