RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CDK9P50750 372 aaKnown RBP14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 ANGPTL8Q6UXH0 198 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 SH2D5Q6ZV89 423 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 TDRPQ86YL5 185 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 ULK2Q8IYT8 1036 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 C4orf33Q8N1A6 199 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 HGDQ93099 445 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 TMEM41AQ96HV5 264 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 OSBPL11Q9BXB4 747 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 UBQLN3Q9H347 655 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 GALNT9Q9HCQ5 603 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 SLC35C2Q9NQQ7 365 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 KLRF1Q9NZS2 232 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 SENP1Q9P0U3 644 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 GRID1Q9ULK0 1009 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 SLC6A5Q9Y345 797 aa14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 POLR3HQ9Y535 204 aaPredicted RBP14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 SETD2Q9BYW2 2564 aaPredicted RBP14.37□□□□□ -0.11
CCDC88B-205ENST00000472524 MED12LQ86YW9 2145 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 SERTM1A2A2V5 107 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 C2orf72A6NCS6 295 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 FRG2CA6NGY1 282 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 UGT2B11O75310 529 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 BCAS2O75934 225 aaPredicted RBP14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 HPNP05981 417 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 HOXD4P09016 255 aaPredicted RBP14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 CRHR1P34998 444 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 PPICP45877 212 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 DNAJB13P59910 316 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 DCAF7P61962 342 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 CRYZQ08257 329 aaKnown RBP14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 ZNF763Q0D2J5 394 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 C2orf80Q0P641 193 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 ERCC6LQ2NKX8 1250 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 EIPR1Q53HC9 387 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 TIGD3Q6B0B8 471 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 GALNT18Q6P9A2 607 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 NUP54Q7Z3B4 507 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 WDR53Q7Z5U6 358 aaPredicted RBP14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 LIX1LQ8IVB5 337 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 SAMD14Q8IZD0 417 aaPredicted RBP14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 FAM9CQ8IZT9 166 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 OR1J4Q8NGS1 313 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 TMBIM1Q969X1 311 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 C11orf24Q96F05 449 aaPredicted RBP14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 BBS4Q96RK4 519 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 L2HGDHQ9H9P8 463 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 PPCSQ9HAB8 311 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 TNFRSF12AQ9NP84 129 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 MAPRE3Q9UPY8 281 aa14.36□□□□□ -0.11
CCDC88B-205ENST00000472524 PRAMEF25A6NGN4 478 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 ICOSLGO75144 302 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 CDH16O75309 829 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 REM1O75628 298 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 CPA3P15088 417 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 KRT4P19013 534 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 DRD5P21918 477 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 PTPN6P29350 595 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 PTGDSP41222 190 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 GSTM5P46439 218 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 WNT3P56703 355 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 CORO7P57737 925 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 NAA20P61599 178 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 WIPI1Q5MNZ9 446 aaPredicted RBP14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 RIPPLY2Q5TAB7 128 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 SLC30A6Q6NXT4 461 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 YRDCQ86U90 279 aaKnown RBP14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 DMRTC2Q8IXT2 367 aaPredicted RBP14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 RDH11Q8TC12 318 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 TIMP4Q99727 224 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 FOLH1BQ9HBA9 442 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 MIEF1Q9NQG6 463 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 OXSMQ9NWU1 459 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 SIRT5Q9NXA8 310 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 CAMK2AQ9UQM7 478 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 GPR55Q9Y2T6 319 aaPredicted RBP14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 FIS1Q9Y3D6 152 aa14.35□□□□□ -0.11
CCDC88B-205ENST00000472524 MTORP42345 2549 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 TLDC2A0PJX2 215 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 KDM4EB2RXH2 506 aaPredicted RBP14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 FAM47E-STBD1D6RA91 191 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 H3BQF6 201 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 SNPHO15079 494 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 TO15178 435 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 ERN1O75460 977 aaKnown RBP14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 JUNP05412 331 aaKnown RBP14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 DDCP20711 480 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 MPIP34949 423 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 KRT20P35900 424 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 NCBP2P52298 156 aaKnown RBP eCLIP14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 ZNF155Q12901 538 aaPredicted RBP14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 CEBPEQ15744 281 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 PRSS53Q2L4Q9 553 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 ACSF3Q4G176 576 aaPredicted RBP14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 LIPMQ5VYY2 423 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 CLEC6AQ6EIG7 209 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 TMEM81Q6P7N7 255 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 NPSR1Q6W5P4 371 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 SEM1Q6ZVN7 128 aa14.34□□□□□ -0.11
CCDC88B-205ENST00000472524 TMEM200AQ86VY9 491 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms