RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 PRODH2Q9UF12 536 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 MSRB2Q9Y3D2 182 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 PCDHGA6Q9Y5G7 932 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 NSG1A0A0A6YYJ2 146 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 TRBV11-1A0A0K0K1C0 115 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 ELOVL7A1L3X0 281 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 GSTA4O15217 222 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 CREG1O75629 220 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 APC2O95996 2303 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 BCHEP06276 602 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 ALOX5P09917 674 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 NCK1P16333 377 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 CORO7P57737 925 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 SRSF6Q13247 344 aaKnown RBP13.59□□□□□ -0.23
TNF-208ENST00000449264 ADRM1Q16186 407 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 BTBD16Q32M84 506 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 MRGPREQ86SM8 312 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 C9orf40Q8IXQ3 194 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 MICU2Q8IYU8 434 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 COX18Q8N8Q8 333 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 NFAM1Q8NET5 270 aaPredicted RBP13.59□□□□□ -0.23
TNF-208ENST00000449264 MIPOL1Q8TD10 442 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 GPR151Q8TDV0 419 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 CDS1Q92903 461 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 VMP1Q96GC9 406 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 VSTM2LQ96N03 204 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 SPATA9Q9BWV2 254 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 ZNF700Q9H0M5 742 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 ZNF160Q9HCG1 818 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 FBXL4Q9UKA2 621 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 KCNE3Q9Y6H6 103 aa13.59□□□□□ -0.23
TNF-208ENST00000449264 NCOR2Q9Y618 2525 aa13.58□□□□□ -0.23
TNF-208ENST00000449264 PCSK5Q92824 1860 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 PRKNO60260 465 aaPredicted RBP13.58□□□□□ -0.24
TNF-208ENST00000449264 GABRA3P34903 492 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 MAN2A2P49641 1150 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 GPR143P51810 404 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 CLN3Q13286 438 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 VMACQ2NL98 169 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 SPATS1Q496A3 300 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 C1orf146Q5VVC0 180 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 NDUFAF7Q7L592 441 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 SLC29A4Q7RTT9 530 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 C16orf62Q7Z3J2 963 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 NET1Q7Z628 596 aaPredicted RBP13.58□□□□□ -0.24
TNF-208ENST00000449264 APCDD1LQ8NCL9 501 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 C11orf65Q8NCR3 313 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 NFKBIDQ8NI38 313 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 FIG4Q92562 907 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 PIK3R3Q92569 461 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 FAM117AQ9C073 453 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 P4HTMQ9NXG6 502 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 P2RX2Q9UBL9 471 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 ZNF223Q9UK11 482 aaPredicted RBP13.58□□□□□ -0.24
TNF-208ENST00000449264 POMPQ9Y244 141 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 CFL2Q9Y281 166 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 ACACAQ13085 2346 aa13.58□□□□□ -0.24
TNF-208ENST00000449264 TMEM247A6NEH6 219 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 DUXAA6NLW8 204 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 C5orf58C9J3I9 102 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 MASP2O00187 686 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 ASNA1O43681 348 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 SLC28A2O43868 658 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 CELA2AP08217 269 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 ARAFP10398 606 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 BMP2P12643 396 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 HTR1EP28566 365 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 AQP1P29972 269 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 ERFP50548 548 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 CLCN2P51788 898 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 PSG6Q00889 435 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 BNIP2Q12982 314 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 ATP1A4Q13733 1029 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 SCARB2Q14108 478 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 TRIM25Q14258 630 aaKnown RBP13.57□□□□□ -0.24
TNF-208ENST00000449264 EBPQ15125 230 aaKnown RBP13.57□□□□□ -0.24
TNF-208ENST00000449264 SYPL1Q16563 259 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 ATAD3BQ5T9A4 648 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 HLA-DQA1Q5Y7H0 255 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 ERICH5Q6P6B1 374 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 ZCCHC12Q6PEW1 402 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 NPSR1Q6W5P4 371 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 HSDL2Q6YN16 418 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 OLIG3Q7RTU3 272 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 GALNT10Q86SR1 603 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 TNIP2Q8NFZ5 429 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 THAP3Q8WTV1 239 aaPredicted RBP13.57□□□□□ -0.24
TNF-208ENST00000449264 ASB9Q96DX5 294 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 SLC35A4Q96G79 324 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 TMEM19Q96HH6 336 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 LMF2Q9BU23 707 aaKnown RBP13.57□□□□□ -0.24
TNF-208ENST00000449264 TMEM38AQ9H6F2 299 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 EXD2Q9NVH0 621 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 THUMPD1Q9NXG2 353 aaKnown RBP13.57□□□□□ -0.24
TNF-208ENST00000449264 SNX13Q9Y5W8 968 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 CACNA1AO00555 2505 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 FRYQ5TBA9 3013 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 ZFHX4Q86UP3 3567 aa13.57□□□□□ -0.24
TNF-208ENST00000449264 C2orf92A0A1B0GVN3 265 aa13.56□□□□□ -0.24
TNF-208ENST00000449264 GXYLT2A0PJZ3 443 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms