RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 CDR2Q01850 454 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 CYP24A1Q07973 514 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 IFFO1Q0D2I5 559 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 GAGE5Q13069 117 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 GAGE6Q13070 117 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 SNTA1Q13424 505 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 HERC3Q15034 1050 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 TAF13Q15543 124 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 UAP1Q16222 522 aaPredicted RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 XKR3Q5GH77 459 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 SIRPB2Q5JXA9 342 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 SLC39A4Q6P5W5 647 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 KDM7AQ6ZMT4 941 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 MARK2Q7KZI7 788 aaKnown RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 SMIM29Q86T20 159 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 SYVN1Q86TM6 617 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 CCDC60Q8IWA6 550 aaPredicted RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 C10orf67Q8IYJ2 551 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 FAM71AQ8IYT1 594 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 RCOR2Q8IZ40 523 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 FBXL13Q8NEE6 735 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 OR4C15Q8NGM1 316 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 ZNF564Q8TBZ8 553 aaPredicted RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 ATP8B4Q8TF62 1192 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.7□□□□□ -1.82
VPS29-202ENST00000447578 SEPT8Q92599 483 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 KIFAP3Q92845 792 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 MAGOHBQ96A72 148 aaKnown RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 C14orf79Q96F83 325 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 IFT74Q96LB3 600 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 ATP6V1G3Q96LB4 118 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 GUCD1Q96NT3 240 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 IL17FQ96PD4 163 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 BTBD9Q96Q07 612 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 CDCA3Q99618 268 aaPredicted RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 ASCL2Q99929 193 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 SPAG8Q99932 426 aaPredicted RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 NTMT1Q9BV86 223 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 OR2B2Q9GZK3 357 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 ATG10Q9H0Y0 220 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 TRPV6Q9H1D0 765 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 C5orf66Q9H5L9 145 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 ZDHHC6Q9H6R6 413 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 COQ10BQ9H8M1 238 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 ZBTB20Q9HC78 741 aaPredicted RBP3.7□□□□□ -1.82
VPS29-202ENST00000447578 RAB20Q9NX57 234 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 LCMT1Q9UIC8 334 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 PSORS1C1Q9UIG5 152 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 SNX24Q9Y343 169 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 GRIN2DO15399 1336 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 NFASCO94856 1347 aa3.7□□□□□ -1.82
VPS29-202ENST00000447578 IGHV4OR15-8A0A075B7B6 117 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 PRAC2D3DTV9 90 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 ANKRD65E5RJM6 399 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 TULP2O00295 520 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 O00370 1275 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 NDUFAB1O14561 156 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 XPNPEP2O43895 674 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 EXTL3O43909 919 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 SCGB2A1O75556 95 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 OR6A2O95222 327 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 PAK4O96013 591 aaPredicted RBP3.69□□□□□ -1.82
VPS29-202ENST00000447578 IGHV4-39P01824 125 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 CXCL10P02778 98 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 RAF1P04049 648 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 IGHV4-31P0DP07 118 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 GZMAP12544 262 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 GP1BBP13224 206 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 TNNI1P19237 187 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 CYP3A5P20815 502 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 EFNA1P20827 205 aaPredicted RBP3.69□□□□□ -1.82
VPS29-202ENST00000447578 GLRA2P23416 452 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 SRD5A2P31213 254 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 MDH1P40925 334 aaKnown RBP3.69□□□□□ -1.82
VPS29-202ENST00000447578 ACAA2P42765 397 aaKnown RBP3.69□□□□□ -1.82
VPS29-202ENST00000447578 ACOT2P49753 483 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 MTTPP55157 894 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 CLDN17P56750 224 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 RWDD2BP57060 319 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 SSTP61278 116 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 SCGB2A2Q13296 93 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 EMC2Q15006 297 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 GPR33Q49SQ1 333 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 STPG1Q5TH74 334 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 AGBL2Q5U5Z8 902 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 UNQ6126/PRO20091Q6UXV3 157 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 ZNF852Q6ZMS4 543 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 SLC13A5Q86YT5 568 aaPredicted RBP3.69□□□□□ -1.82
VPS29-202ENST00000447578 APOBEC3FQ8IUX4 373 aaKnown RBP3.69□□□□□ -1.82
VPS29-202ENST00000447578 TBC1D21Q8IYX1 336 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 ARFGAP2Q8N6H7 521 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 GBP7Q8N8V2 638 aaPredicted RBP3.69□□□□□ -1.82
VPS29-202ENST00000447578 PRELID2Q8N945 189 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 LRTM2Q8N967 370 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 IPMKQ8NFU5 416 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 OR7A2PQ8NGA2 310 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 OR13C3Q8NGS6 347 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 UBTD2Q8WUN7 234 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 SHC3Q92529 594 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 TMEM143Q96AN5 459 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms