RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 CEACAM20Q6UY09 585 aa2.33□□□□□ -2.04
MCF2-204ENST00000414978 SLC38A6Q8IZM9 456 aa2.33□□□□□ -2.04
MCF2-204ENST00000414978 OR4L1Q8NH43 312 aa2.33□□□□□ -2.04
MCF2-204ENST00000414978 NUDCD2Q8WVJ2 157 aa2.33□□□□□ -2.04
MCF2-204ENST00000414978 TMEM143Q96AN5 459 aa2.33□□□□□ -2.04
MCF2-204ENST00000414978 SCAND2PQ9GZW5 306 aaPredicted RBP2.33□□□□□ -2.04
MCF2-204ENST00000414978 SPRTNQ9H040 489 aaPredicted RBP2.33□□□□□ -2.04
MCF2-204ENST00000414978 MAGT1Q9H0U3 335 aa2.33□□□□□ -2.04
MCF2-204ENST00000414978 RBM38Q9H0Z9 239 aaKnown RBP2.33□□□□□ -2.04
MCF2-204ENST00000414978 RNF146Q9NTX7 359 aa2.33□□□□□ -2.04
MCF2-204ENST00000414978 SLC12A6Q9UHW9 1150 aa2.33□□□□□ -2.04
MCF2-204ENST00000414978 RALYQ9UKM9 306 aaKnown RBP2.33□□□□□ -2.04
MCF2-204ENST00000414978 STUB1Q9UNE7 303 aa2.33□□□□□ -2.04
MCF2-204ENST00000414978 B9D1Q9UPM9 204 aa2.33□□□□□ -2.04
MCF2-204ENST00000414978 ZFHX2Q9C0A1 2572 aaPredicted RBP2.33□□□□□ -2.04
MCF2-204ENST00000414978 SPTBN4Q9H254 2564 aa2.33□□□□□ -2.04
MCF2-204ENST00000414978 SMIM35A0A1B0GVV1 85 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 OR5K3A6NET4 321 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CSO75390 466 aaKnown RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 UPK3AO75631 287 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 MOCS2O96007 188 aaPredicted RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 H1F0P07305 194 aaKnown RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 CALM1P0DP23 149 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CALM2P0DP24 149 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CALM3P0DP25 149 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 ODC1P11926 461 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 FCGR1AP12314 374 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 HOXA9P31269 272 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 SFTPDP35247 375 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 BRCC3P46736 316 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 RGS4P49798 205 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CCL11P51671 97 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 MAT1AQ00266 395 aaKnown RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 IRF8Q02556 426 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 TRAP1Q12931 704 aaKnown RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 TAF10Q12962 218 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 ITPRIPL2Q3MIP1 535 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 FSCBQ5H9T9 825 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 DCAF12Q5T6F0 453 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 ATAD3BQ5T9A4 648 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 FUT10Q6P4F1 479 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 DEGS2Q6QHC5 323 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 ARSKQ6UWY0 536 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 TPRG1Q6ZUI0 275 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 SLC39A11Q8N1S5 342 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CSGALNACT2Q8N6G5 542 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 NANOGP1Q8N7R0 232 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 NOA1Q8NC60 698 aaKnown RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 SMPDL3AQ92484 453 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 DUSP26Q9BV47 211 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CCDC94Q9BW85 323 aaPredicted RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 RIOX1Q9H6W3 641 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 FAM207AQ9NSI2 230 aaPredicted RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 ZNF701Q9NV72 531 aaPredicted RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 DLGAP4Q9Y2H0 992 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 AP4B1Q9Y6B7 739 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 GVINP1Q7Z2Y8 2422 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 A0A1B0GVL5 298 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 TMEM129A0AVI4 362 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 SHISA7A6NL88 538 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 ARHGEF9O43307 516 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 SERPINI2O75830 405 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 KIAA0754O94854 1291 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 SYNGR4O95473 234 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CLDN14O95500 239 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 PABPC4LP0CB38 370 aaKnown RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 GP1BBP13224 206 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CD58P19256 250 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 UGT1A1P22309 533 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 ACADSBP45954 432 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 MMP15P51511 669 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 SELENOVP59797 346 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 ENPEPQ07075 957 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 STXBP2Q15833 593 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 SLC36A3Q495N2 470 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 FBXO48Q5FWF7 155 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 ARMCX4Q5H9R4 360 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 MANEAQ5SRI9 462 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 FRG2Q64ET8 278 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 LRRC66Q68CR7 880 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 FAM173BQ6P4H8 233 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 CCNI2Q6ZMN8 369 aaPredicted RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 DPY19L4Q7Z388 723 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 PATL1Q86TB9 770 aaKnown RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 FBXO16Q8IX29 292 aaPredicted RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 ZNF444Q8N0Y2 327 aaPredicted RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 CENPSQ8N2Z9 138 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 SLC24A4Q8NFF2 622 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 ANKRD7Q92527 254 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 TAAR8Q969N4 342 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 COQ2Q96H96 371 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 COQ10AQ96MF6 247 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 MBOAT7Q96N66 472 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 FANCEQ9HB96 536 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 OLFML3Q9NRN5 406 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 HS3ST3A1Q9Y663 406 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 COL1A2P08123 1366 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 THADAQ6YHU6 1953 aa2.32□□□□□ -2.04
MCF2-204ENST00000414978 ZNF99A8MXY4 864 aaPredicted RBP2.32□□□□□ -2.04
MCF2-204ENST00000414978 SLC28A1O00337 649 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms