RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 KLHL36Q8N4N3 616 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 PTGR2Q8N8N7 351 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 OR56A1Q8NGH5 318 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 PINX1Q96BK5 328 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF419Q96HQ0 510 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 UBL7Q96S82 380 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 DCLRE1CQ96SD1 692 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 SLC29A1Q99808 456 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ENKD1Q9H0I2 346 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 TSPAN10Q9H1Z9 355 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 OR51E2Q9H255 320 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 EBF3Q9H4W6 596 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 Q9N2J8 555 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ARMC1Q9NVT9 282 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 DOK5Q9P104 306 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 STEAP1Q9UHE8 339 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 CLEC4EQ9ULY5 219 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 BARX2Q9UMQ3 279 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 PCDHA3Q9Y5H8 950 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 CFAP74Q9C0B2 1584 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 NID2Q14112 1375 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 TEX14Q8IWB6 1497 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ERVV-2B6SEH9 535 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 LPOP22079 712 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 LCN1P31025 176 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 VIPR1P32241 457 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 ADCYAP1R1P41586 468 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 RPL23AP62750 156 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 RPL24P83731 157 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 INCA1Q0VD86 236 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 GRM2Q14416 872 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 Q3ZCU0 254 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 OTOP3Q7RTS5 596 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 AMZ2Q86W34 360 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 KLBQ86Z14 1044 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 OR5L1Q8NGL2 311 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 LPPQ93052 612 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 URM1Q9BTM9 101 aaKnown RBP4.44□□□□□ -1.7
SCN1A-202ENST00000375405 SUV39H2Q9H5I1 410 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 PLEKHJ1Q9NW61 149 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 EBF1Q9UH73 591 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 PLAGL2Q9UPG8 496 aa4.44□□□□□ -1.7
SCN1A-202ENST00000375405 CALCAP01258 141 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ADH4P08319 380 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 OR4E1P0C645 316 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 METTL15P1P0C7V9 234 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 CXCL8P10145 99 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ANXA8P13928 327 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 BPIP17213 487 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 GRPRP30550 384 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 PPT1P50897 306 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 CCR8P51685 355 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ARSFP54793 590 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 MLF1P58340 268 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 PDIA5Q14554 519 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 MEDAGQ5VYS4 303 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 OGFOD3Q6PK18 319 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 SLC47A2Q86VL8 602 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 OR4D10Q8NGI6 311 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 TERB2Q8NHR7 220 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 BTBD10Q9BSF8 475 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 PBX4Q9BYU1 374 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 RIOX1Q9H6W3 641 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ONECUT1Q9UBC0 465 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 AGO1Q9UL18 857 aaKnown RBP4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ACSL5Q9ULC5 683 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ATP23Q9Y6H3 246 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 IGHV3OR16-12A0A075B7B8 117 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 KRBOX1C9JBD0 128 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 BCKDKO14874 412 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 KCNAB3O43448 404 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 UPK1BO75841 260 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 SNRNP70P08621 437 aaKnown RBP4.43□□□□□ -1.7
SCN1A-202ENST00000375405 HOXB2P14652 356 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 DPEP1P16444 411 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 CRABP1P29762 137 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 SLC6A8P48029 635 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 GRIA4P48058 902 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 DIO3P55073 304 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ERVK-25P63136 954 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 BAXQ07812 192 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 CEBPEQ15744 281 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ZC3H12AQ5D1E8 599 aaKnown RBP4.43□□□□□ -1.7
SCN1A-202ENST00000375405 PXDC1Q5TGL8 231 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 AADACL3Q5VUY0 350 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 SHEQ5VZ18 495 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 OR52E8Q6IFG1 317 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 SLC27A4Q6P1M0 643 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 WDR74Q6RFH5 385 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-202ENST00000375405 MPZL3Q6UWV2 235 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 TSPYL5Q86VY4 417 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-202ENST00000375405 CDH26Q8IXH8 852 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.43□□□□□ -1.7
SCN1A-202ENST00000375405 KIAA0895Q8NCT3 520 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 SLC2A14Q8TDB8 520 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 TMEM230Q96A57 120 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF845Q96IR2 970 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-202ENST00000375405 OR5B2Q96R09 309 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 OR11A1Q9GZK7 315 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 OR51I2Q9H344 312 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms