RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 CHST10O43529 356 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 MRPS14O60783 128 aaKnown RBP16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 DCNP07585 359 aaKnown RBP16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 PRKAR1BP31321 381 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 HPCAP84074 193 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 MGAT2Q10469 447 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 DGCR6Q14129 220 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 FAM53BQ14153 422 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 RAB39AQ14964 217 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 PRICKLE4Q2TBC4 344 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 DCST1Q5T197 706 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 XAF1Q6GPH4 301 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 SPARTQ8N0X7 666 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 CARFQ8N187 725 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 SLC16A11Q8NCK7 471 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 CTHRC1Q96CG8 243 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 NMD3Q96D46 503 aaKnown RBP16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 PRRC1Q96M27 445 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 DUSP21Q9H596 190 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 PAK1IP1Q9NWT1 392 aaPredicted RBP16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 UCKL1Q9NWZ5 548 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 MAT2BQ9NZL9 334 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 MGAT4BQ9UQ53 548 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 TPRKBQ9Y3C4 175 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 CSNK1G3Q9Y6M4 447 aa16.84■□□□□ 0.29
HLA-DQB1-201ENST00000374943 UGT2B17O75795 530 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 ZIC2O95409 532 aaPredicted RBP16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 NSA2O95478 260 aaKnown RBP16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 SLC35E2P0CK97 266 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 ACP2P11117 423 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 HOXA6P31267 233 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 MLLT3P42568 568 aaPredicted RBP16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 CSNK2BP67870 215 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 ID2Q02363 134 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 TRMT12Q53H54 448 aaKnown RBP16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 ZNF311Q5JNZ3 666 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 FGD3Q5JSP0 725 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 LAIR1Q6GTX8 287 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 FRRS1Q6ZNA5 592 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 ENTHD1Q8IYW4 607 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 LINC00471Q8N535 108 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 BPIFB6Q8NFQ5 453 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 ZNF420Q8TAQ5 688 aaPredicted RBP16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 CDS1Q92903 461 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 ZDHHC12Q96GR4 267 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 STACQ99469 402 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 PIGUQ9H490 435 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 ENAMQ9NRM1 1142 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 SATB2Q9UPW6 733 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 CLCA2Q9UQC9 943 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 PCDHGB1Q9Y5G3 927 aa16.83■□□□□ 0.28
HLA-DQB1-201ENST00000374943 CCDC163A0A0D9SF12 145 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 RHPN2P1A8MT19 583 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 FAM227AF5H4B4 570 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 FOXS1O43638 330 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 PCDHGA12O60330 932 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 SDC3O75056 442 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 WBP4O75554 376 aaKnown RBP16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 GASTP01350 101 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 RNH1P13489 461 aaKnown RBP16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 NT5EP21589 574 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 PDX1P52945 283 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 GFERP55789 205 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 SLC35A2P78381 396 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 DMWDQ09019 674 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 TUBA3CQ13748 450 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 NEDD8Q15843 81 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 DUSP5Q16690 384 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 TCTE1Q5JU00 501 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 KLHL17Q6TDP4 642 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 SHISA5Q8N114 240 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 CDRT4Q8N9R6 151 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 OR6T1Q8NGN1 323 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 OR13F1Q8NGS4 319 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 APH1BQ8WW43 257 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 SGCDQ92629 289 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 HOXB13Q92826 284 aaPredicted RBP16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 NODALQ96S42 347 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 DGCR6LQ9BY27 220 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 CXorf21Q9HAI6 301 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 DUSP22Q9NRW4 184 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 SCN3BQ9NY72 215 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 IFT52Q9Y366 437 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 RNF215Q9Y6U7 377 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 ADAMTS20P59510 1910 aa16.82■□□□□ 0.28
HLA-DQB1-201ENST00000374943 SH3PXD2BA1X283 911 aa16.81■□□□□ 0.28
HLA-DQB1-201ENST00000374943 FITM1A5D6W6 292 aa16.81■□□□□ 0.28
HLA-DQB1-201ENST00000374943 XPNPEP2O43895 674 aa16.81■□□□□ 0.28
HLA-DQB1-201ENST00000374943 MED26O95402 600 aa16.81■□□□□ 0.28
HLA-DQB1-201ENST00000374943 DCKP27707 260 aa16.81■□□□□ 0.28
HLA-DQB1-201ENST00000374943 FMO3P31513 532 aa16.81■□□□□ 0.28
HLA-DQB1-201ENST00000374943 PLA2G5P39877 138 aa16.81■□□□□ 0.28
HLA-DQB1-201ENST00000374943 MAP3K8P41279 467 aa16.81■□□□□ 0.28
HLA-DQB1-201ENST00000374943 EMP3P54852 163 aa16.81■□□□□ 0.28
HLA-DQB1-201ENST00000374943 IGLV3-21P80748 117 aaPredicted RBP16.81■□□□□ 0.28
HLA-DQB1-201ENST00000374943 SEC23BQ15437 767 aa16.81■□□□□ 0.28
HLA-DQB1-201ENST00000374943 NPTX1Q15818 432 aa16.81■□□□□ 0.28
HLA-DQB1-201ENST00000374943 MLIPQ5VWP3 458 aa16.81■□□□□ 0.28
HLA-DQB1-201ENST00000374943 WDR53Q7Z5U6 358 aaPredicted RBP16.81■□□□□ 0.28
HLA-DQB1-201ENST00000374943 DEPDC4Q8N2C3 294 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms