RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 ELMO1Q92556 727 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 FIG4Q92562 907 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 FAM162AQ96A26 154 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 SDCCAG3Q96C92 435 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 TCEAL4Q96EI5 215 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 FAM120BQ96EK7 910 aaKnown RBP4.54□□□□□ -1.68
USP48-202ENST00000374730 SLC47A1Q96FL8 570 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 AURKBQ96GD4 344 aaPredicted RBP4.54□□□□□ -1.68
USP48-202ENST00000374730 HIC2Q96JB3 615 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 VPS50Q96JG6 964 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 CNDP2Q96KP4 475 aaKnown RBP4.54□□□□□ -1.68
USP48-202ENST00000374730 FRG2BQ96QU4 278 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 P2RY13Q9BPV8 354 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 RBM4BQ9BQ04 359 aaKnown RBP4.54□□□□□ -1.68
USP48-202ENST00000374730 TREX2Q9BQ50 279 aaPredicted RBP4.54□□□□□ -1.68
USP48-202ENST00000374730 TUBA1CQ9BQE3 449 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 THUMPD3Q9BV44 507 aaKnown RBP4.54□□□□□ -1.68
USP48-202ENST00000374730 RBM4Q9BWF3 364 aaKnown RBP4.54□□□□□ -1.68
USP48-202ENST00000374730 BBS2Q9BXC9 721 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 EPHX3Q9H6B9 360 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 C11orf49Q9H6J7 331 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 BRF2Q9HAW0 419 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 ZFP14Q9HCL3 533 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 DCAF13Q9NV06 445 aaKnown RBP4.54□□□□□ -1.68
USP48-202ENST00000374730 DDX18Q9NVP1 670 aaKnown RBP4.54□□□□□ -1.68
USP48-202ENST00000374730 HCFC1R1Q9NWW0 138 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 FAM120CQ9NX05 1096 aaKnown RBP4.54□□□□□ -1.68
USP48-202ENST00000374730 TMEM9Q9P0T7 183 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 IFT80Q9P2H3 777 aaPredicted RBP4.54□□□□□ -1.68
USP48-202ENST00000374730 MGAT4CQ9UBM8 478 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 SLCO3A1Q9UIG8 710 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 CDH7Q9ULB5 785 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 CHD7Q9P2D1 2997 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 C2orf16Q68DN1 1984 aa4.54□□□□□ -1.68
USP48-202ENST00000374730 TRANK1O15050 2925 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 TRIM64BA6NI03 449 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 EVPLLA8MZ36 301 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 B4E171 279 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 G3V2T6 193 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 RFXANKO14593 260 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 HOXC11O43248 304 aaPredicted RBP4.53□□□□□ -1.68
USP48-202ENST00000374730 DPM1O60762 260 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 SCN2BO60939 215 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 ATG13O75143 517 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 TRMUO75648 421 aaKnown RBP4.53□□□□□ -1.68
USP48-202ENST00000374730 MYO1DO94832 1006 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 CCNDBP1O95273 360 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 CST1P01037 141 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 MT-ND1P03886 318 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 CATP04040 527 aaKnown RBP4.53□□□□□ -1.68
USP48-202ENST00000374730 SEMG1P04279 462 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 CTSLP07711 333 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 GPX2P18283 190 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 NELFEP18615 380 aaKnown RBP4.53□□□□□ -1.68
USP48-202ENST00000374730 CD22P20273 847 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 PPIBP23284 216 aaKnown RBP4.53□□□□□ -1.68
USP48-202ENST00000374730 DCKP27707 260 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 SHMT2P34897 504 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 SERPINF1P36955 418 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 NNMTP40261 264 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 TSPAN7P41732 249 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 CDKN2CP42773 168 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 ASMTP46597 345 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 RPS6KA3P51812 740 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 CDH15P55291 814 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 IRF8Q02556 426 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 CFHR3Q02985 330 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 UBE3AQ05086 875 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 LRRC74AQ0VAA2 488 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 GRSF1Q12849 480 aaKnown RBP eCLIP4.53□□□□□ -1.68
USP48-202ENST00000374730 TOMM20Q15388 145 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 TWIST1Q15672 202 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 ST3GAL2Q16842 350 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 DUOXA1Q1HG43 343 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 GTDC1Q4AE62 458 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 ZNF658BQ4V348 819 aaPredicted RBP4.53□□□□□ -1.68
USP48-202ENST00000374730 SYTL3Q4VX76 610 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 ZNF805Q5CZA5 627 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 C3orf38Q5JPI3 329 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.53□□□□□ -1.68
USP48-202ENST00000374730 LRRC73Q5JTD7 316 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 RBM48Q5RL73 367 aaKnown RBP4.53□□□□□ -1.68
USP48-202ENST00000374730 AP1ARQ63HQ0 302 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 TMEM215Q68D42 235 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 NOXRED1Q6NXP6 359 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 SHQ1Q6PI26 577 aaKnown RBP4.53□□□□□ -1.68
USP48-202ENST00000374730 AGTRAPQ6RW13 159 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 TBPL2Q6SJ96 375 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 ENPP6Q6UWR7 440 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 DET1Q7L5Y6 550 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 CAMKMTQ7Z624 323 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 THOC6Q86W42 341 aaKnown RBP4.53□□□□□ -1.68
USP48-202ENST00000374730 HIPK1Q86Z02 1210 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 SLC22A15Q8IZD6 547 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 OFCC1Q8IZS5 231 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 CLEC4FQ8N1N0 589 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 FAM86B1Q8N7N1 296 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 MRPL43Q8N983 215 aaKnown RBP4.53□□□□□ -1.68
USP48-202ENST00000374730 OR5K1Q8NHB7 308 aa4.53□□□□□ -1.68
USP48-202ENST00000374730 CLHC1Q8NHS4 586 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms