RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 LAMP5Q9UJQ1 280 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 ING4Q9UNL4 249 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 SH3PXD2BA1X283 911 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 SLC22A1O15245 554 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 ACOX3O15254 700 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 SCGNO76038 276 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 ALDH16A1Q8IZ83 802 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 TOR1AIP2Q8NFQ8 470 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 OR4K5Q8NGD3 323 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 ELSPBP1Q96BH3 223 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 IRF2BPLQ9H1B7 796 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 GPN1Q9HCN4 374 aaPredicted RBP10.97□□□□□ -0.65
SYNE1-204ENST00000367248 ERVK-18Q9QC07 812 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 PRDM4Q9UKN5 801 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 NPIPA5A0A0B4J1W7 369 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 NPIPA7E9PJI5 369 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 NPIPA8P0DM63 369 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 RPL34P49207 117 aaKnown RBP10.97□□□□□ -0.65
SYNE1-204ENST00000367248 OR9A4Q8NGU2 314 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 FKBP10Q96AY3 582 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 MYNNQ9NPC7 610 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 CUEDC1Q9NWM3 386 aaPredicted RBP10.97□□□□□ -0.65
SYNE1-204ENST00000367248 ERVK-19Q9WJR5 959 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 CCDC88AQ3V6T2 1871 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 CTGFP29279 349 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 SLC15A1P46059 708 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 BCAP31P51572 246 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 DCDC1P59894 354 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 SFT2D3Q587I9 215 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 TRIM63Q969Q1 353 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 NAA11Q9BSU3 229 aaPredicted RBP10.96□□□□□ -0.65
SYNE1-204ENST00000367248 ACPTQ9BZG2 426 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 SMURF1Q9HCE7 757 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 ZNF879B4DU55 563 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 NME4O00746 187 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 PROM1O43490 865 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 CBX3Q13185 183 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 HMBOX1Q6NT76 420 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 KCTD18Q6PI47 426 aaPredicted RBP10.96□□□□□ -0.65
SYNE1-204ENST00000367248 LKAAEAR1Q8TD35 194 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 RBM24Q9BX46 236 aaKnown RBP10.96□□□□□ -0.65
SYNE1-204ENST00000367248 CLEC4EQ9ULY5 219 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 A0A1B0GVI7 797 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 FABP12A6NFH5 140 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 MYF5P13349 255 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 HIST1H1TP22492 207 aaPredicted RBP10.96□□□□□ -0.65
SYNE1-204ENST00000367248 RORCP51449 518 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 ARHGDIBP52566 201 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 ADAMTSL4Q6UY14 1074 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 VWA5B2Q8N398 1253 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 SARDHQ9UL12 918 aa10.96□□□□□ -0.65
SYNE1-204ENST00000367248 COL22A1Q8NFW1 1626 aaPredicted RBP10.96□□□□□ -0.65
SYNE1-204ENST00000367248 EEF1E1-BLOC1S5C9J1V9 151 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 EEF1E1O43324 174 aaKnown RBP10.96□□□□□ -0.66
SYNE1-204ENST00000367248 APOL3O95236 402 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 CLIC3O95833 236 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 HPRP00739 348 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 MT-ND5P03915 603 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 ERCC1P07992 297 aaPredicted RBP10.96□□□□□ -0.66
SYNE1-204ENST00000367248 HTR1AP08908 422 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 TAS2R43P59537 309 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 ZP2Q05996 745 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 ZBED5Q49AG3 693 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 PRAMEF20Q5VT98 475 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 TMEM80Q96HE8 168 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 LIN28AQ9H9Z2 209 aaKnown RBP10.96□□□□□ -0.66
SYNE1-204ENST00000367248 PTTG2Q9NZH5 202 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 EIF3KQ9UBQ5 218 aaKnown RBP10.96□□□□□ -0.66
SYNE1-204ENST00000367248 EXOSC1Q9Y3B2 195 aaKnown RBP10.96□□□□□ -0.66
SYNE1-204ENST00000367248 CACNA1SQ13698 1873 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 HMGN2P05204 90 aaKnown RBP10.96□□□□□ -0.66
SYNE1-204ENST00000367248 TSTQ16762 297 aaKnown RBP10.96□□□□□ -0.66
SYNE1-204ENST00000367248 LCN8Q6JVE9 175 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 KIAA0907Q7Z7F0 614 aaPredicted RBP10.96□□□□□ -0.66
SYNE1-204ENST00000367248 GID4Q8IVV7 300 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 NAGSQ8N159 534 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 OR2L8Q8NGY9 312 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 TANKQ92844 425 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 CDX2Q99626 313 aaPredicted RBP10.96□□□□□ -0.66
SYNE1-204ENST00000367248 MYH10P35580 1976 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 TOR1BO14657 336 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 CPOXP36551 454 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 MC3RP41968 323 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 ADAM8P78325 824 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 TAP2Q03519 686 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 PLEKHG7Q6ZR37 379 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 LINGO2Q7L985 606 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 METTL25Q8N6Q8 603 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 HTRA1Q92743 480 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 MUS81Q96NY9 551 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 IL21Q9HBE4 155 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 FAM53CQ9NYF3 392 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 AP1M2Q9Y6Q5 423 aa10.96□□□□□ -0.66
SYNE1-204ENST00000367248 SMIM30A4D0T7 59 aa10.95□□□□□ -0.66
SYNE1-204ENST00000367248 ATE1O95260 518 aa10.95□□□□□ -0.66
SYNE1-204ENST00000367248 PAGE3Q5JUK9 113 aa10.95□□□□□ -0.66
SYNE1-204ENST00000367248 ERI1Q8IV48 349 aaKnown RBP10.95□□□□□ -0.66
SYNE1-204ENST00000367248 ENDOVQ8N8Q3 282 aaKnown RBP10.95□□□□□ -0.66
SYNE1-204ENST00000367248 FAM117AQ9C073 453 aa10.95□□□□□ -0.66
SYNE1-204ENST00000367248 TIMMDC1Q9NPL8 285 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms