RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SEMA3DO95025 777 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 CD8BP10966 210 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 PORP16435 677 aaPredicted RBP12.52□□□□□ -0.41
VPS29-201ENST00000360579 CNTFP26441 200 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 CCKARP32238 428 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 GMPRP36959 345 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 ATP5J2P56134 94 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 EEFSECP57772 596 aaKnown RBP12.52□□□□□ -0.41
VPS29-201ENST00000360579 HMGCS1Q01581 520 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 NNATQ16517 81 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 BEX5Q5H9J7 111 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 HMBOX1Q6NT76 420 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 VWA1Q6PCB0 445 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 MILR1Q7Z6M3 343 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 ISCA2Q86U28 154 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 TEX9Q8N6V9 391 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 IGFBPL1Q8WX77 278 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 ZNF845Q96IR2 970 aaPredicted RBP12.52□□□□□ -0.41
VPS29-201ENST00000360579 RBBP8Q99708 897 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 CPNE1Q99829 537 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 ITPAQ9BY32 194 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 OPN3Q9H1Y3 402 aaPredicted RBP12.52□□□□□ -0.41
VPS29-201ENST00000360579 PRODH2Q9UF12 536 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 BCAP29Q9UHQ4 241 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 DKKL1Q9UK85 242 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 DTX4Q9Y2E6 619 aa12.52□□□□□ -0.41
VPS29-201ENST00000360579 SONP18583 2426 aaKnown RBP12.52□□□□□ -0.41
VPS29-201ENST00000360579 A0A1W2PS29 197 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 LRRC14BA6NHZ5 514 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 OR6C70A6NIJ9 312 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 SYCE1LA8MT33 242 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 E7ESA3 106 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 UBXN8O00124 270 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 SEC31AO94979 1220 aaKnown RBP12.51□□□□□ -0.41
VPS29-201ENST00000360579 TP53P04637 393 aaPredicted RBP12.51□□□□□ -0.41
VPS29-201ENST00000360579 PEPDP12955 493 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 PPP3CBP16298 524 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 S1PR1P21453 382 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 DRD5P21918 477 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 LOXP28300 417 aaPredicted RBP12.51□□□□□ -0.41
VPS29-201ENST00000360579 KIR2DL2P43627 348 aaPredicted RBP12.51□□□□□ -0.41
VPS29-201ENST00000360579 NR1H2P55055 460 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 MAP4K2Q12851 820 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 FASTKD3Q14CZ7 662 aaKnown RBP12.51□□□□□ -0.41
VPS29-201ENST00000360579 ETFDHQ16134 617 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 CPSF6Q16630 551 aaKnown RBP eCLIP12.51□□□□□ -0.41
VPS29-201ENST00000360579 ZNF550Q7Z398 422 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 BTLAQ7Z6A9 289 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 TBC1D1Q86TI0 1168 aaPredicted RBP12.51□□□□□ -0.41
VPS29-201ENST00000360579 ZBED8Q8IZ13 594 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 TMEM158Q8WZ71 300 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 ZC3HAV1LQ96H79 300 aaKnown RBP12.51□□□□□ -0.41
VPS29-201ENST00000360579 COL21A1Q96P44 957 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 ATOH8Q96SQ7 321 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 SERPINI1Q99574 410 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 LRRC1Q9BTT6 524 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 BRINP2Q9C0B6 783 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 SMYD2Q9NRG4 433 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 AHSPQ9NZD4 102 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 WIF1Q9Y5W5 379 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 CUBNO60494 3623 aa12.51□□□□□ -0.41
VPS29-201ENST00000360579 MED12Q93074 2177 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 FRG2CA6NGY1 282 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 TO15178 435 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 GUCY1B2O75343 617 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 GBAP04062 536 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 ATP1B1P05026 303 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 TBXA2RP21731 343 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 DPP4P27487 766 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 GP5P40197 560 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 PPICP45877 212 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 PSPHP78330 225 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 DR1Q01658 176 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 TNK1Q13470 666 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 PRICKLE4Q2TBC4 344 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 DESI1Q6ICB0 168 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 ZNF704Q6ZNC4 412 aaPredicted RBP12.5□□□□□ -0.41
VPS29-201ENST00000360579 SH2D5Q6ZV89 423 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 RAPH1Q70E73 1250 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 PAGE2Q7Z2X7 111 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 PIGQQ9BRB3 760 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 EHD3Q9NZN3 535 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 FBXL2Q9UKC9 423 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 ADAM29Q9UKF5 820 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 SNX12Q9UMY4 172 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 PROCRQ9UNN8 238 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 DSCAMO60469 2012 aa12.5□□□□□ -0.41
VPS29-201ENST00000360579 MED12LQ86YW9 2145 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 CHD3Q12873 2000 aaKnown RBP12.49□□□□□ -0.41
VPS29-201ENST00000360579 CCDC189A1A4V9 331 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 C1orf226A1L170 272 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 EFCAB8A8MWE9 144 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 LINC01387J3KSC0 135 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 TLX2O43763 284 aaPredicted RBP12.49□□□□□ -0.41
VPS29-201ENST00000360579 TNFRSF21O75509 655 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 PIAS1O75925 651 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 SOX30O94993 753 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 CGAP01215 116 aa12.49□□□□□ -0.41
VPS29-201ENST00000360579 ALDOAP04075 364 aaKnown RBP12.49□□□□□ -0.41
VPS29-201ENST00000360579 CSNK2A2P19784 350 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms