RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 GSTM4Q03013 218 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 MAPK14Q16539 360 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 ACBD4Q8NC06 268 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 MOAP1Q96BY2 351 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 IGSF5Q9NSI5 407 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 PCTPQ9UKL6 214 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 UNC119BA6NIH7 251 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 JRKO75564 520 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 SLC22A5O76082 557 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 ZNF35P13682 527 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 ACTBP60709 375 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 ACTG1P63261 375 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 CHAF1BQ13112 559 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 CDK10Q15131 360 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 CDNFQ49AH0 187 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 SPIN3Q5JUX0 258 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 NDUFAF5Q5TEU4 345 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 STEAP3Q658P3 488 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 B3GNT8Q7Z7M8 397 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 LILRA2Q8N149 483 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 TEX26Q8N6G2 289 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 Q8N9G6 341 aaPredicted RBP10.95□□□□□ -0.66
VPS39-201ENST00000318006 OR5B12Q96R08 314 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 GSTO2Q9H4Y5 243 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 GORASP2Q9H8Y8 452 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 EMCNQ9ULC0 261 aa10.95□□□□□ -0.66
VPS39-201ENST00000318006 LOC102723532A0A0G2JNH3 316 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 ANKRD33BA6NCL7 494 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 CTDSP2O14595 271 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 SOX3P41225 446 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 PTH2RP49190 550 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 GNMTQ14749 295 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 SF3B4Q15427 424 aaKnown RBP eCLIP10.94□□□□□ -0.662e-6■■■■□ 24.9
VPS39-201ENST00000318006 ZNF791Q3KP31 576 aaPredicted RBP10.94□□□□□ -0.66
VPS39-201ENST00000318006 ITPRIPL2Q3MIP1 535 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 GALNT10Q86SR1 603 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 ZNF565Q8N9K5 539 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 ZNF527Q8NB42 609 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 KCT2Q8NC54 265 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 FBXO15Q8NCQ5 510 aaPredicted RBP10.94□□□□□ -0.66
VPS39-201ENST00000318006 HIST1H2AAQ96QV6 131 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 OR2M2Q96R28 347 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 COPS7AQ9UBW8 275 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 TRIM64A6NGJ6 449 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 TRIM64BA6NI03 449 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 C2orf74A8MZ97 194 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 TMEM150CB9EJG8 249 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 SOCS7O14512 581 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 PRAMEF2O60811 474 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 SNAPINO95295 136 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 ADH1BP00325 375 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 PDGFAP04085 211 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 HCKP08631 526 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 ITGA5P08648 1049 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 NDUFV2P19404 249 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 ATP5A1P25705 553 aaKnown RBP10.94□□□□□ -0.66
VPS39-201ENST00000318006 ALG10Q5BKT4 473 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 AKR1C8PQ5T2L2 129 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 FAM69AQ5T7M9 428 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 PRSS58Q8IYP2 241 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 ESX1Q8N693 406 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 ZDHHC1Q8WTX9 485 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 GLTPQ9NZD2 209 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 CNOT2Q9NZN8 540 aaKnown RBP10.94□□□□□ -0.66
VPS39-201ENST00000318006 TNFP01375 233 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 OR12D1P0DN82 309 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 CLUP10909 449 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 ZNF26P17031 533 aaPredicted RBP10.94□□□□□ -0.66
VPS39-201ENST00000318006 ETV1P50549 477 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 RNASE10Q5GAN6 216 aaKnown RBP10.94□□□□□ -0.66
VPS39-201ENST00000318006 HACD4Q5VWC8 232 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 SLC39A5Q6ZMH5 540 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 SPRED1Q7Z699 444 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 APCDD1Q8J025 514 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 B3GNT7Q8NFL0 401 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 OR4E2Q8NGC2 313 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 RAB7BQ96AH8 199 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 ARL5BQ96KC2 179 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 UQCC2Q9BRT2 126 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 SLC2A11Q9BYW1 496 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 GRHPRQ9UBQ7 328 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 PLAGL1Q9UM63 463 aa10.94□□□□□ -0.66
VPS39-201ENST00000318006 LRP5O75197 1615 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 LCMT2O60294 686 aaKnown RBP10.93□□□□□ -0.66
VPS39-201ENST00000318006 SSTR2P30874 369 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 CAMLGP49069 296 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 LUMP51884 338 aaPredicted RBP10.93□□□□□ -0.66
VPS39-201ENST00000318006 RAB8AP61006 207 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 HERV-K104P61576 105 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 GTDC1Q4AE62 458 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 EOGTQ5NDL2 527 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 SIAEQ9HAT2 523 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 C4AP0C0L4 1744 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 BLOC1S5-TXNDC5H3BN57 136 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 TMEM189-UBE2V1I3L0A0 370 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 JUPP14923 745 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 PKLRP30613 574 aa10.93□□□□□ -0.66
VPS39-201ENST00000318006 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.93□□□□□ -0.665e-15■■■■■ 70.4
VPS39-201ENST00000318006 LARP4Q71RC2 724 aaKnown RBP eCLIP10.93□□□□□ -0.66
VPS39-201ENST00000318006 OR6N2Q8NGY6 317 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms