RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 NRSN1Q8IZ57 195 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 CBARPQ8N350 705 aaPredicted RBP12.21□□□□□ -0.46
COL3A1-201ENST00000304636 ZSCAN1Q8NBB4 408 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 PLA2G15Q8NCC3 412 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 UBXN10Q96LJ8 280 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 MRI1Q9BV20 369 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 PCDHB16Q9NRJ7 776 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 COQ3Q9NZJ6 369 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 SLAMF8Q9P0V8 285 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 B4GALT2O60909 372 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 CSTAP01040 98 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 CLUP10909 449 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 GNSP15586 552 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 PCSK6P29122 969 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 WDR5P61964 334 aaKnown RBP12.21□□□□□ -0.46
COL3A1-201ENST00000304636 ZNF551Q7Z340 670 aaPredicted RBP12.21□□□□□ -0.46
COL3A1-201ENST00000304636 OR5W2Q8NH69 310 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 IRF7Q92985 503 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 JSRP1Q96MG2 331 aaPredicted RBP12.21□□□□□ -0.46
COL3A1-201ENST00000304636 GJD2Q9UKL4 321 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 MAFFQ9ULX9 164 aa12.21□□□□□ -0.46
COL3A1-201ENST00000304636 C5P01031 1676 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 F5H5P2 479 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 NFKBIEO00221 500 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 CTDSP2O14595 271 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 PHYHO14832 338 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 KHNYNO15037 678 aaKnown RBP12.2□□□□□ -0.46
COL3A1-201ENST00000304636 EDIL3O43854 480 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 TNFP01375 233 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 CBLP22681 906 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 CAPZA1P52907 286 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 HERV-K104P61576 105 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 SELPLGQ14242 412 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 GRIN2CQ14957 1233 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 DEFB115Q30KQ5 88 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 LY6G5CQ5SRR4 150 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 CHRDL2Q6WN34 429 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 LINC00299Q6ZSB3 139 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 MFSD8Q8NHS3 518 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 PAAF1Q9BRP4 392 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 RBCK1Q9BYM8 510 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 ZNF436Q9C0F3 470 aaPredicted RBP12.2□□□□□ -0.46
COL3A1-201ENST00000304636 MTHFD2LQ9H903 347 aaPredicted RBP12.2□□□□□ -0.46
COL3A1-201ENST00000304636 MEPEQ9NQ76 525 aaPredicted RBP12.2□□□□□ -0.46
COL3A1-201ENST00000304636 RTCAO00442 366 aaKnown RBP12.2□□□□□ -0.46
COL3A1-201ENST00000304636 ARPC5O15511 151 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 PRKACAP17612 351 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 PIN1Q13526 163 aaPredicted RBP12.2□□□□□ -0.46
COL3A1-201ENST00000304636 CHRFAM7AQ494W8 412 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 GSG1LQ6UXU4 331 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 C12orf40Q86WS4 652 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 GTPBP8Q8N3Z3 284 aaPredicted RBP12.2□□□□□ -0.46
COL3A1-201ENST00000304636 OR7G1Q8NGA0 311 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 OR52E2Q8NGJ4 325 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 SLC7A13Q8TCU3 470 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 SORCS1Q8WY21 1168 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 PTTG3PQ9NZH4 202 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 CD300AQ9UGN4 299 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 LAMB4A4D0S4 1761 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 IRS2Q9Y4H2 1338 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 TRAPPC13A5PLN9 417 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 ELOAQ14241 798 aaKnown RBP12.2□□□□□ -0.46
COL3A1-201ENST00000304636 RAB11BQ15907 218 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 SMN1Q16637 294 aaKnown RBP12.2□□□□□ -0.46
COL3A1-201ENST00000304636 PTRH1Q86Y79 214 aaKnown RBP12.2□□□□□ -0.46
COL3A1-201ENST00000304636 MDGA1Q8NFP4 955 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 OR7G3Q8NG95 312 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 ELP5Q8TE02 316 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 CMKLR1Q99788 373 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 ARHGAP39Q9C0H5 1083 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 PRODH2Q9UF12 536 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 M0R129 80 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 GABARAPO95166 117 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 PRKCAP17252 672 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 ADRA1AP35348 466 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 PTH2RP49190 550 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 MRPS10P82664 201 aaKnown RBP12.2□□□□□ -0.46
COL3A1-201ENST00000304636 SLC14A2Q15849 920 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 STEAP3Q658P3 488 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 CRTC1Q6UUV9 634 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 NRARPQ7Z6K4 114 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 PELI3Q8N2H9 469 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 RPL3LQ92901 407 aaKnown RBP12.2□□□□□ -0.46
COL3A1-201ENST00000304636 IL17FQ96PD4 163 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 PFDN5Q99471 154 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 DPYSL5Q9BPU6 564 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 EPHA6Q9UF33 1036 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 KLK4Q9Y5K2 254 aa12.2□□□□□ -0.46
COL3A1-201ENST00000304636 H7C417 338 aa12.19□□□□□ -0.46
COL3A1-201ENST00000304636 HPGDSO60760 199 aa12.19□□□□□ -0.46
COL3A1-201ENST00000304636 RNASE10Q5GAN6 216 aaKnown RBP12.19□□□□□ -0.46
COL3A1-201ENST00000304636 RAB41Q5JT25 222 aa12.19□□□□□ -0.46
COL3A1-201ENST00000304636 ZNF776Q68DI1 518 aaPredicted RBP12.19□□□□□ -0.46
COL3A1-201ENST00000304636 FRMPD2BQ6IN97 320 aa12.19□□□□□ -0.46
COL3A1-201ENST00000304636 ARL14Q8N4G2 192 aa12.19□□□□□ -0.46
COL3A1-201ENST00000304636 AVL9Q8NBF6 648 aa12.19□□□□□ -0.46
COL3A1-201ENST00000304636 ISL2Q96A47 359 aa12.19□□□□□ -0.46
COL3A1-201ENST00000304636 SLC2A11Q9BYW1 496 aa12.19□□□□□ -0.46
COL3A1-201ENST00000304636 EIF5A2Q9GZV4 153 aaKnown RBP12.19□□□□□ -0.46
COL3A1-201ENST00000304636 K7ERQ8 282 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms