RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 NAGAP17050 411 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 S1PR1P21453 382 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 CNTFP26441 200 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 PCSK6P29122 969 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 CPOXP36551 454 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 PTGDSP41222 190 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 PAFAH1B1P43034 410 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 STARP49675 285 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 GPX6P59796 221 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 FAM111BQ6SJ93 734 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 CYS1Q717R9 158 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 ADGRE4PQ86SQ3 457 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 WDR20Q8TBZ3 569 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 HGDQ93099 445 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 OMA1Q96E52 524 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 COX4I2Q96KJ9 171 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 Q96MF0 132 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 MDFIQ99750 246 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 G6PC3Q9BUM1 346 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 ITPAQ9BY32 194 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 PIGMQ9H3S5 423 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 PSD3Q9NYI0 1048 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.63■□□□□ 0.41
CLN3-262ENST00000637699 MED12LQ86YW9 2145 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 TLN2Q9Y4G6 2542 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 FOXE1O00358 373 aaPredicted RBP17.62■□□□□ 0.41
CLN3-262ENST00000637699 SMAD7O15105 426 aaKnown RBP17.62■□□□□ 0.41
CLN3-262ENST00000637699 UGDHO60701 494 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 CBR3O75828 277 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 KLK1P06870 262 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 PORP16435 677 aaPredicted RBP17.62■□□□□ 0.41
CLN3-262ENST00000637699 DIO3P55073 304 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 IRF9Q00978 393 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 GTF2H2Q13888 395 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 EXOSC7Q15024 291 aaKnown RBP17.62■□□□□ 0.41
CLN3-262ENST00000637699 GTF2H2CQ6P1K8 395 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 GOLGA7Q7Z5G4 137 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 WDSUB1Q8N9V3 476 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 CDK15Q96Q40 435 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 SERPINI1Q99574 410 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 BRINP2Q9C0B6 783 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 ACBD3Q9H3P7 528 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 RNF14Q9UBS8 474 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 PACSIN3Q9UKS6 424 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 EXO1Q9UQ84 846 aaKnown RBP17.62■□□□□ 0.41
CLN3-262ENST00000637699 ACOT9Q9Y305 439 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 TESMINQ9Y4I5 508 aa17.62■□□□□ 0.41
CLN3-262ENST00000637699 ZANQ9Y493 2812 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 EIF3HO15372 352 aaKnown RBP eCLIP17.61■□□□□ 0.41
CLN3-262ENST00000637699 UGT2B11O75310 529 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 RHOXF2BP0C7M4 288 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 ARL1P40616 181 aaPredicted RBP17.61■□□□□ 0.41
CLN3-262ENST00000637699 ALDH18A1P54886 795 aaKnown RBP17.61■□□□□ 0.41
CLN3-262ENST00000637699 FAM27E3Q08E93 113 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 PLCXD2Q0VAA5 305 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 CALCOCO2Q13137 446 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 GAB1Q13480 694 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 TMEM81Q6P7N7 255 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 IFNEQ86WN2 208 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 CENPLQ8N0S6 344 aaPredicted RBP17.61■□□□□ 0.41
CLN3-262ENST00000637699 LRRC75A-AS1Q8N1F1 130 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 L3MBTL4Q8NA19 623 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 SIMC1Q8NDZ2 872 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 RHEBL1Q8TAI7 183 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 PIGTQ969N2 578 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 LCORQ96JN0 433 aaPredicted RBP17.61■□□□□ 0.41
CLN3-262ENST00000637699 UCN2Q96RP3 112 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 OR2B2Q9GZK3 357 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 TAS2R10Q9NYW0 307 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 CLCF1Q9UBD9 225 aa17.61■□□□□ 0.41
CLN3-262ENST00000637699 PRAMEF25A6NGN4 478 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 PLOD2O00469 737 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 SIAH2O43255 324 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 SMNDC1O75940 238 aaKnown RBP eCLIP17.6■□□□□ 0.41
CLN3-262ENST00000637699 SEMA3DO95025 777 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 SIX3O95343 332 aaPredicted RBP17.6■□□□□ 0.41
CLN3-262ENST00000637699 CLDN9O95484 217 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 TCEA1P23193 301 aaKnown RBP17.6■□□□□ 0.41
CLN3-262ENST00000637699 FEN1P39748 380 aaKnown RBP17.6■□□□□ 0.41
CLN3-262ENST00000637699 GFRA1P56159 465 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 MGAT2Q10469 447 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 SNTA1Q13424 505 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 FAM83EQ2M2I3 478 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 PRICKLE4Q2TBC4 344 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 CCNYL2Q5T2Q4 361 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 GRAMD2AQ8IUY3 354 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 WFIKKN1Q96NZ8 548 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 PIP5K1AQ99755 562 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 MRPL1Q9BYD6 325 aaKnown RBP17.6■□□□□ 0.41
CLN3-262ENST00000637699 NOL11Q9H8H0 719 aaKnown RBP17.6■□□□□ 0.41
CLN3-262ENST00000637699 UBTD1Q9HAC8 227 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 KLHL28Q9NXS3 571 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 CPSF2Q9P2I0 782 aaKnown RBP17.6■□□□□ 0.41
CLN3-262ENST00000637699 CFL2Q9Y281 166 aa17.6■□□□□ 0.41
CLN3-262ENST00000637699 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 A0A1W2PNV4 684 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 CTIFO43310 598 aaKnown RBP17.59■□□□□ 0.41
CLN3-262ENST00000637699 ERAL1O75616 437 aaKnown RBP17.59■□□□□ 0.41
CLN3-262ENST00000637699 TNFSF13O75888 250 aa17.59■□□□□ 0.41
CLN3-262ENST00000637699 TGM6O95932 706 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms