RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 PGRMC2O15173 223 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 CBR3O75828 277 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 POU2F1P14859 743 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 STMN1P16949 149 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 CHMP24386 653 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 BSGP35613 385 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 PTGDSP41222 190 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 PIK3CBP42338 1070 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 NR1H2P55055 460 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 FUT7Q11130 342 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 E2F2Q14209 437 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 MRM1Q6IN84 353 aaKnown RBP13.31□□□□□ -0.28
PNKP-218ENST00000625299 AAGABQ6PD74 315 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 NUDT13Q86X67 352 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 GAS2L3Q86XJ1 694 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 TEX9Q8N6V9 391 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 HGDQ93099 445 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 OMA1Q96E52 524 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 UCN2Q96RP3 112 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 OSBPL9Q96SU4 736 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 ZNF717Q9BY31 904 aaPredicted RBP13.31□□□□□ -0.28
PNKP-218ENST00000625299 ITPAQ9BY32 194 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 MOCS1Q9NZB8 636 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 NUDT4Q9NZJ9 180 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 BCAP29Q9UHQ4 241 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 ANGPTL3Q9Y5C1 460 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 MXRA5Q9NR99 2828 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 USF3Q68DE3 2245 aa13.31□□□□□ -0.28
PNKP-218ENST00000625299 PRAMEF25A6NGN4 478 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 RHOXF2BP0C7M4 288 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 PTX3P26022 381 aaPredicted RBP13.3□□□□□ -0.28
PNKP-218ENST00000625299 IVDP26440 423 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 CCKARP32238 428 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 LHX2P50458 406 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 GFRA1P56159 465 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 PLEKHM3Q6ZWE6 761 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 CHMP1BQ7LBR1 199 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 NUP54Q7Z3B4 507 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 WDSUB1Q8N9V3 476 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 TMEM171Q8WVE6 324 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 CTHRC1Q96CG8 243 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 STARD4Q96DR4 205 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 PGM2Q96G03 612 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 MCMBPQ9BTE3 642 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 BRINP2Q9C0B6 783 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 DDX31Q9H8H2 851 aaKnown RBP13.3□□□□□ -0.28
PNKP-218ENST00000625299 DKKL1Q9UK85 242 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 EXO1Q9UQ84 846 aaKnown RBP13.3□□□□□ -0.28
PNKP-218ENST00000625299 PPP2R2CQ9Y2T4 447 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 ROS1P08922 2347 aa13.3□□□□□ -0.28
PNKP-218ENST00000625299 SLC22A20A6NK97 555 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 UGT2B11O75310 529 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 UGT2B10P36537 528 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 XKP51811 444 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 CLDN18P56856 261 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 DMTNQ08495 405 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 EXOSC7Q15024 291 aaKnown RBP13.29□□□□□ -0.28
PNKP-218ENST00000625299 CPSF6Q16630 551 aaKnown RBP eCLIP13.29□□□□□ -0.28
PNKP-218ENST00000625299 ANKRD34AQ69YU3 496 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 HMBOX1Q6NT76 420 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 ZNF474Q6S9Z5 364 aaPredicted RBP13.29□□□□□ -0.28
PNKP-218ENST00000625299 BTLAQ7Z6A9 289 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 KLHL7Q8IXQ5 586 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 UBQLNLQ8IYU4 475 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 ZBED8Q8IZ13 594 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 MAPK1IP1LQ8NDC0 245 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 C17orf47Q8NEP4 570 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 ADCY4Q8NFM4 1077 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 OR7G1Q8NGA0 311 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 OR4K14Q8NGD5 310 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 STAG3L4Q8TBR4 150 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 SLC39A3Q9BRY0 314 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 TRIM31Q9BZY9 425 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 FBXL2Q9UKC9 423 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 DLGAP4Q9Y2H0 992 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 PCDHGA11Q9Y5H2 935 aa13.29□□□□□ -0.28
PNKP-218ENST00000625299 CUBNO60494 3623 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 CXorf49A8MYA2 514 aaPredicted RBP13.28□□□□□ -0.28
PNKP-218ENST00000625299 C16orf97H3BN30 126 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 HCRTR2O43614 444 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 CPMP14384 443 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 ZNF708P17019 499 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 NAGAP17050 411 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 SRD5A2P31213 254 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 PIK3CGP48736 1102 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 NEK2P51955 445 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 ARFIP1P53367 373 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 ATP5J2P56134 94 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 RAB10P61026 200 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 SNTA1Q13424 505 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 TNK1Q13470 666 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 OR5M10Q6IEU7 315 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 OR2A2Q6IF42 318 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 TMEM81Q6P7N7 255 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 FAM111BQ6SJ93 734 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 RAPH1Q70E73 1250 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 PLCZ1Q86YW0 608 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 PHC2Q8IXK0 858 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 UBTD2Q8WUN7 234 aa13.28□□□□□ -0.28
PNKP-218ENST00000625299 REPS1Q96D71 796 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms