RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 LIPT1Q9Y234 373 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 PCDHGC4Q9Y5F7 938 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 PTPRSQ13332 1948 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 ARPC4-TTLL3A0A0A6YYG9 625 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 CARNS1A5YM72 827 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 OR5K4A6NMS3 321 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 GABRR3A8MPY1 467 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 A8MXK9 166 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 TLX2O43763 284 aaPredicted RBP10.24□□□□□ -0.77
UPF3A-212ENST00000619079 OR10H3O60404 316 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 FGF18O76093 207 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 SOX14O95416 240 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 CFDP00746 253 aaPredicted RBP10.24□□□□□ -0.77
UPF3A-212ENST00000619079 TCRBP04435 133 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 HIST1H2AGP0C0S8 130 aaPredicted RBP10.24□□□□□ -0.77
UPF3A-212ENST00000619079 ACP2P11117 423 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 HSD3B1P14060 373 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 UGT2B7P16662 529 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 HIST1H2ADP20671 130 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 HSD3B2P26439 372 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 ACSL1P33121 698 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 RFX3P48380 749 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 DGKGP49619 791 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 MVDP53602 400 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 SMIM11AP58511 58 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 ZNF169Q14929 603 aaPredicted RBP10.24□□□□□ -0.77
UPF3A-212ENST00000619079 ZMYND11Q15326 602 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 NDUFA9Q16795 377 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 DCST1Q5T197 706 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 RETSATQ6NUM9 610 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 RASSF6Q6ZTQ3 369 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 IKBIPQ70UQ0 350 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 TMEM173Q86WV6 379 aaPredicted RBP10.24□□□□□ -0.77
UPF3A-212ENST00000619079 SCN4BQ8IWT1 228 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 FTMTQ8N4E7 242 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 FBXO22Q8NEZ5 403 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 OR8D4Q8NGM9 314 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 KCTD12Q96CX2 325 aaKnown RBP10.24□□□□□ -0.77
UPF3A-212ENST00000619079 GIMAP5Q96F15 307 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 SENP5Q96HI0 755 aaPredicted RBP10.24□□□□□ -0.77
UPF3A-212ENST00000619079 HIST1H2AHQ96KK5 128 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 SMIM14Q96QK8 99 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 HIST1H2AJQ99878 128 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 C19orf43Q9BQ61 176 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 H2AFJQ9BTM1 129 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 BHLHE41Q9C0J9 482 aaPredicted RBP10.24□□□□□ -0.77
UPF3A-212ENST00000619079 ZNF576Q9H609 170 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 ZNF275Q9NSD4 429 aaPredicted RBP10.24□□□□□ -0.77
UPF3A-212ENST00000619079 DNAJC11Q9NVH1 559 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 TVP23BQ9NYZ1 205 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 ZNF624Q9P2J8 865 aaPredicted RBP10.24□□□□□ -0.77
UPF3A-212ENST00000619079 POMT2Q9UKY4 750 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 NPTNQ9Y639 398 aa10.24□□□□□ -0.77
UPF3A-212ENST00000619079 TRBV4-1A0A0J9YWV2 114 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 MGAT4DA6NG13 374 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 F5H5T6 163 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 GPR39O43194 453 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 KDELR3O43731 214 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 MMP20O60882 483 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 HMGN1P05114 100 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 CHRM5P08912 532 aaPredicted RBP10.23□□□□□ -0.77
UPF3A-212ENST00000619079 ELK1P19419 428 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 BTCP35070 178 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 SLC6A12P48065 614 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 PITPNBP48739 271 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 PTPN5P54829 565 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 PCBP3P57721 371 aaKnown RBP10.23□□□□□ -0.77
UPF3A-212ENST00000619079 TAP2Q03519 686 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 RING1Q06587 406 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 XKR6Q5GH73 641 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 ZNF697Q5TEC3 545 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 LIPJQ5W064 366 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 FAM198BQ6UWH4 519 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 MARCH9Q86YJ5 346 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 MIB1Q86YT6 1006 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 GATAD2BQ8WXI9 593 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 SCRN2Q96FV2 425 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 IGSF21Q96ID5 467 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 LRR1Q96L50 414 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 SLC38A2Q96QD8 506 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 C7orf50Q9BRJ6 194 aaKnown RBP10.23□□□□□ -0.77
UPF3A-212ENST00000619079 ARHGAP9Q9BRR9 750 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 SLC35A5Q9BS91 424 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 MCCC2Q9HCC0 563 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 MYO16Q9Y6X6 1858 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 NUP214P35658 2090 aaPredicted RBP10.23□□□□□ -0.77
UPF3A-212ENST00000619079 PTPRDP23468 1912 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 CHD9Q3L8U1 2897 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 A0A0D9SEW6 157 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 M0QZQ0 153 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 SOX1O00570 391 aaPredicted RBP10.23□□□□□ -0.77
UPF3A-212ENST00000619079 SSNA1O43805 119 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 TP53P04637 393 aaPredicted RBP10.23□□□□□ -0.77
UPF3A-212ENST00000619079 C8GP07360 202 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 CHI3L1P36222 383 aaPredicted RBP10.23□□□□□ -0.77
UPF3A-212ENST00000619079 RPL6Q02878 288 aaKnown RBP10.23□□□□□ -0.77
UPF3A-212ENST00000619079 EEF1A2Q05639 463 aaKnown RBP10.23□□□□□ -0.77
UPF3A-212ENST00000619079 COX20Q5RI15 118 aa10.23□□□□□ -0.77
UPF3A-212ENST00000619079 OR2G6Q5TZ20 316 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms