RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ATG9BQ674R7 924 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 GLDNQ6ZMI3 551 aaPredicted RBP3.99□□□□□ -1.77
LINC00540-201ENST00000611481 LEKR1Q6ZMV7 388 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 TFAP2DQ7Z6R9 452 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 TMEM110Q86TL2 294 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 SIAH3Q8IW03 269 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 LIX1Q8N485 282 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 C11orf44Q8N8P7 122 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 IQUBQ8NA54 791 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 IPMKQ8NFU5 416 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 PSMA8Q8TAA3 256 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 FAM57AQ8TBR7 257 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 CCDC110Q8TBZ0 833 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 IRGQQ8WZA9 623 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 NPIPB3Q92617 1050 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 C17orf62Q9BQA9 187 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 MGME1Q9BQP7 344 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 REG4Q9BYZ8 158 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 DENND2DQ9H6A0 471 aaPredicted RBP3.99□□□□□ -1.77
LINC00540-201ENST00000611481 UCK1Q9HA47 277 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 FANCEQ9HB96 536 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 GPATCH2LQ9NWQ4 482 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 SOHLH2Q9NX45 425 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 COX16Q9P0S2 106 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 SEMA5BQ9P283 1151 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 PEMTQ9UBM1 199 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 EXTL2Q9UBQ6 330 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 HSPB7Q9UBY9 170 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 NKX1-2Q9UD57 310 aaPredicted RBP3.99□□□□□ -1.77
LINC00540-201ENST00000611481 TSPAN16Q9UKR8 245 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 MKLN1Q9UL63 735 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 VWFP04275 2813 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 ANKRD12Q6UB98 2062 aa3.99□□□□□ -1.77
LINC00540-201ENST00000611481 HERC2O95714 4834 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 A0A1B0GTH9 108 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 OR5H15A6NDH6 313 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 TUBAL3A6NHL2 446 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 SLC9B1P1A6NJY1 282 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 C3orf70A6NLC5 250 aaPredicted RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 OR5K4A6NMS3 321 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 KDM4EB2RXH2 506 aaPredicted RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 TMEM150CB9EJG8 249 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 RASGRF2O14827 1237 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 TTI1O43156 1089 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 ZNF749O43361 778 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 BCAS2O75934 225 aaPredicted RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 SOX30O94993 753 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 CTDNEP1O95476 244 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 TRUB2O95900 331 aaKnown RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 TMEM11P17152 192 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 ITGA2P17301 1181 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 MMP11P24347 488 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 PTPN3P26045 913 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 FMO4P31512 558 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 LUMP51884 338 aaPredicted RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 ACTG1P63261 375 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 PITX1P78337 314 aaPredicted RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 BST2Q10589 180 aaKnown RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 RALGDSQ12967 914 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 NPRL3Q12980 569 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 ZNF273Q14593 569 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 ASTE1Q2TB18 679 aaPredicted RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 SLC25A35Q3KQZ1 300 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 HSP90AA5PQ58FG0 334 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 DNTTIP2Q5QJE6 756 aaKnown RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 ARHGAP17Q68EM7 881 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 RAET1GQ6H3X3 334 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 GJB7Q6PEY0 223 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 GBP6Q6ZN66 633 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 IL17RELQ6ZVW7 336 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 FAM57BQ71RH2 274 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 SPATA19Q7Z5L4 167 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 ZER1Q7Z7L7 766 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 SETD3Q86TU7 594 aaPredicted RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 TRIM74Q86UV6 250 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 HOOK3Q86VS8 718 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 KMT5CQ86Y97 462 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 ARIH2OSQ8N7S6 290 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 TC2NQ8N9U0 490 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 CAMKVQ8NCB2 501 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 OR1L3Q8NH93 324 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 LINC01560Q8TB33 94 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 BCAS4Q8TDM0 211 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 TEKT4Q8WW24 435 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 SGCDQ92629 289 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 RAD54LQ92698 747 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 CORO2AQ92828 525 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 ISG20Q96AZ6 181 aaKnown RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 NUS1Q96E22 293 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 RBMXL1Q96E39 390 aaKnown RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 WDYHV1Q96HA8 205 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 GDAP1L1Q96MZ0 367 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 PAFAH2Q99487 392 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 PKP2Q99959 881 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 SRSF8Q9BRL6 282 aaKnown RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 NUP85Q9BW27 656 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 FAM129AQ9BZQ8 928 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 SLC5A7Q9GZV3 580 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 MIS12Q9H081 205 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 ATG10Q9H0Y0 220 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms