RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ERAL1O75616 437 aaKnown RBP11.81□□□□□ -0.52
UPF1-208ENST00000600012 PDE5AO76074 875 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 ABCB1P08183 1280 aaPredicted RBP11.81□□□□□ -0.52
UPF1-208ENST00000600012 PGM1P36871 562 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 BUD31P41223 144 aaPredicted RBP11.81□□□□□ -0.52
UPF1-208ENST00000600012 ZNF750Q32MQ0 723 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 ANXA8L1Q5VT79 327 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 ZNF324BQ6AW86 544 aaPredicted RBP11.81□□□□□ -0.52
UPF1-208ENST00000600012 SLC48A1Q6P1K1 146 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 DLEU7Q6UYE1 221 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 BNC2Q6ZN30 1099 aaPredicted RBP11.81□□□□□ -0.52
UPF1-208ENST00000600012 NDUFAF7Q7L592 441 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 FJX1Q86VR8 437 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 MSRB3Q8IXL7 192 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 OR4A15Q8NGL6 344 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 NR4A3Q92570 626 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 MCUR1Q96AQ8 359 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 C8orf44Q96CB5 159 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 MVB12AQ96EY5 273 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 ZNF764Q96H86 408 aaPredicted RBP11.81□□□□□ -0.52
UPF1-208ENST00000600012 PEX11GQ96HA9 241 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 CCDC115Q96NT0 180 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 PANX1Q96RD7 426 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 MESP1Q9BRJ9 268 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 GPATCH1Q9BRR8 931 aaKnown RBP11.81□□□□□ -0.52
UPF1-208ENST00000600012 RUBCNLQ9H714 662 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 SLC35C2Q9NQQ7 365 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 C14orf105Q9NVL8 296 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 EHD3Q9NZN3 535 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 BTNL2Q9UIR0 455 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 UTS2RQ9UKP6 389 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 CES1P1Q9UKY3 287 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 CDC14AQ9UNH5 594 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.81□□□□□ -0.52
UPF1-208ENST00000600012 SPACA6W5XKT8 324 aa11.81□□□□□ -0.52
UPF1-208ENST00000600012 TEP1Q99973 2627 aaKnown RBP11.8□□□□□ -0.52
UPF1-208ENST00000600012 PCNX1Q96RV3 2341 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 TRBV5-3A0A0A0MS03 114 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 A0A1W2PQ72 361 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 A0A1W2PRB8 838 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 CFAP73A6NFT4 308 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 IDSB3KWA1 339 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 PRSS44E7EML9 344 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 RNASET2O00584 256 aaKnown RBP11.8□□□□□ -0.52
UPF1-208ENST00000600012 RFXANKO14593 260 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 PCDH17O14917 1159 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 ANP32DO95626 131 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 C1QCP02747 245 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 SERPINA7P05543 415 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 C8orf89P0DMQ9 161 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 COX6A1P12074 109 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 HOXB9P17482 250 aaPredicted RBP11.8□□□□□ -0.52
UPF1-208ENST00000600012 SLC6A2P23975 617 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 PTGER1P34995 402 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 SOX11P35716 441 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 TNFSF10P50591 281 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 TDGF1P3P51864 188 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 SLC7A2P52569 658 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 EMP2P54851 167 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 SKP1P63208 163 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 ID2Q02363 134 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 DUSP2Q05923 314 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 GAB1Q13480 694 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 DSG2Q14126 1118 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 SELPLGQ14242 412 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 VWA2Q5GFL6 755 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 LRIF1Q5T3J3 769 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 OR52E8Q6IFG1 317 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 NIPAL1Q6NVV3 410 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 RNF148Q8N7C7 305 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 VPS37AQ8NEZ2 397 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 BRIX1Q8TDN6 353 aaKnown RBP11.8□□□□□ -0.52
UPF1-208ENST00000600012 PSMF1Q92530 271 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 RELTQ969Z4 430 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 CNRIP1Q96F85 164 aaPredicted RBP11.8□□□□□ -0.52
UPF1-208ENST00000600012 AURKBQ96GD4 344 aaPredicted RBP11.8□□□□□ -0.52
UPF1-208ENST00000600012 CDRT15Q96T59 188 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 CGREF1Q99674 301 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 RPF2Q9H7B2 306 aaKnown RBP11.8□□□□□ -0.52
UPF1-208ENST00000600012 MS4A12Q9NXJ0 267 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 SLC25A37Q9NYZ2 338 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 ADA2Q9NZK5 511 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 VAPAQ9P0L0 249 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 PTGFRNQ9P2B2 879 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 GMPR2Q9P2T1 348 aaKnown RBP11.8□□□□□ -0.52
UPF1-208ENST00000600012 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.8□□□□□ -0.52
UPF1-208ENST00000600012 ERVK-11Q9UQG0 969 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 RRP15Q9Y3B9 282 aaKnown RBP11.8□□□□□ -0.52
UPF1-208ENST00000600012 PKDREJQ9NTG1 2253 aa11.8□□□□□ -0.52
UPF1-208ENST00000600012 IGHV1-45A0A0A0MS14 117 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 MYOCOSA0A1B0GUC4 107 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 H0YIG0 161 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 CYR61O00622 381 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 NME4O00746 187 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 LDB3O75112 727 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 ERN1O75460 977 aaKnown RBP11.79□□□□□ -0.52
UPF1-208ENST00000600012 BMP10O95393 424 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 RNH1P13489 461 aaKnown RBP11.79□□□□□ -0.52
UPF1-208ENST00000600012 PRF1P14222 555 aa11.79□□□□□ -0.52
UPF1-208ENST00000600012 DDX5P17844 614 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms