RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, humanhuman

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-216ENST00000592790 HMGA2P52926 109 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 B2MP61769 119 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 TSPAN5P62079 268 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 C19orf57Q0VDD7 668 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 TSPAN31Q12999 210 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 KIAA0040Q15053 153 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 TMEM201Q5SNT2 666 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 KHDRBS2Q5VWX1 349 aaKnown RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 NADSYN1Q6IA69 706 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 FAM122CQ6P4D5 195 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 ARHGAP11AQ6P4F7 1023 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 ASB18Q6ZVZ8 466 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 HIST3H2AQ7L7L0 130 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 LINGO2Q7L985 606 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 TSPAN33Q86UF1 283 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 COMMD7Q86VX2 200 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 ARL14EPQ8N8R7 260 aaPredicted RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 C7orf57Q8NEG2 295 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 DBF4BQ8NFT6 615 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 HIST1H2ACQ93077 130 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 HAVCR1Q96D42 359 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 ANAPC16Q96DE5 110 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 ZC3HAV1LQ96H79 300 aaKnown RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 ZFP3Q96NJ6 502 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 SECISBP2Q96T21 854 aaKnown RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 MYOCQ99972 504 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 PAAF1Q9BRP4 392 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 FUZQ9BT04 418 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 THAP7Q9BT49 309 aaPredicted RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 BOCQ9BWV1 1114 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 ALOXE3Q9BYJ1 711 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 ZNF436Q9C0F3 470 aaPredicted RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 SLC7A5P2Q9GIP4 190 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 SRRQ9GZT4 340 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 KATNBL1Q9H079 304 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 MIR1-1HGQ9H1L0 117 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 MMP28Q9H239 520 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 PPIL3Q9H2H8 161 aaKnown RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 DPEP2Q9H4A9 486 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 C12orf10Q9HB07 376 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 GKN1Q9NS71 199 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 FKBP14Q9NWM8 211 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 TAS2R10Q9NYW0 307 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 MRTO4Q9UKD2 239 aaKnown RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 UTS2RQ9UKP6 389 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 MRPS33Q9Y291 106 aaKnown RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 MED31Q9Y3C7 131 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 ALG5Q9Y673 324 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 CLCA3PQ9Y6N3 262 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 PARP14Q460N5 1801 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 TRIOBPQ9H2D6 2365 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 PLXNA1Q9UIW2 1896 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 KANTRA0A1W2PQU2 76 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 A0A1W2PRQ8 180 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 SLC35F4A4IF30 521 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 SYNDIG1LA6NDD5 238 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 GLTPD2A6NH11 291 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 UNC119BA6NIH7 251 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 WASHC1A8K0Z3 465 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 ANHXE9PGG2 379 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 TEX46H3BTG2 121 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 I6L893 689 aaPredicted RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 TSPAN4O14817 238 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 HOXC11O43248 304 aaPredicted RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 KRT33AO76009 404 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 SOD2P04179 222 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 HTR1AP08908 422 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 FURINP09958 794 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 SLC35G6P0C7Q6 338 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 IFI30P13284 250 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 RAB3BP20337 219 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 CBLP22681 906 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 FGF9P31371 208 aaPredicted RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 CCR7P32248 378 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 RPL4P36578 427 aaKnown RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 SOX3P41225 446 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 CDKN2CP42773 168 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 BDKRB1P46663 353 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 SLC11A1P49279 550 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 STK19P49842 368 aaPredicted RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 RAG2P55895 527 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 MAZP56270 477 aaKnown RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 CTBP2P56545 445 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 CLDN20P56880 219 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 PSMA6P60900 246 aaKnown RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 RAP2BP61225 183 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 ARF5P84085 180 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 CAP1Q01518 475 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 BAMBIQ13145 260 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 EIF4EBP2Q13542 120 aaPredicted RBP3.35□□□□□ -1.87
VMP1-216ENST00000592790 TPBGQ13641 420 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 TOMM20Q15388 145 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 ANKRD39Q53RE8 183 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 ZNF805Q5CZA5 627 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 CYHR1Q6ZMK1 362 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 ZNF765Q7L2R6 523 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 TMEM179BQ7Z7N9 219 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 LRRTM4Q86VH4 590 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 SNX29P2Q8IUI4 249 aa3.35□□□□□ -1.87
VMP1-216ENST00000592790 LAX1Q8IWV1 398 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms