RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CMIPQ8IY22 773 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 SVBPQ8N300 66 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 KAT2AQ92830 837 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 LRFN5Q96NI6 719 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 DDOQ99489 341 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 OSBPL2Q9H1P3 480 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 MIXL1Q9H2W2 232 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 POMKQ9H5K3 350 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 SEMA3GQ9NS98 782 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 SLCO1C1Q9NYB5 712 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 COMMD3Q9UBI1 195 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 GOLT1BQ9Y3E0 138 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 OR10H1Q9Y4A9 318 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 SOX30O94993 753 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 SLC2A1P11166 492 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 ZNF14P17017 642 aaPredicted RBP10.28□□□□□ -0.76
CLK3-226ENST00000569406 HNF1AP20823 631 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 EPHA2P29317 976 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 HOXC12P31275 282 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 DCTP40126 519 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 MAP3K8P41279 467 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 GATMP50440 423 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 CXCR4P61073 352 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 NUTF2P61970 127 aaKnown RBP10.28□□□□□ -0.76
CLK3-226ENST00000569406 GTF2H3Q13889 308 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 KRBOX4Q5JUW0 171 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 CLEC6AQ6EIG7 209 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 PAPD4Q6PIY7 484 aaKnown RBP10.28□□□□□ -0.76
CLK3-226ENST00000569406 POMGNT2Q8NAT1 580 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 RELL2Q8NC24 303 aaPredicted RBP10.28□□□□□ -0.76
CLK3-226ENST00000569406 CCDC54Q8NEL0 328 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 MARS2Q96GW9 593 aaKnown RBP10.28□□□□□ -0.76
CLK3-226ENST00000569406 C2orf88Q9BSF0 95 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 SPATA5L1Q9BVQ7 753 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 IL22Q9GZX6 179 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 WDCPQ9H6R7 721 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 ASCL3Q9NQ33 180 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 CHD7Q9P2D1 2997 aa10.28□□□□□ -0.76
CLK3-226ENST00000569406 NCF1BA6NI72 391 aaPredicted RBP10.27□□□□□ -0.76
CLK3-226ENST00000569406 NCF1CA8MVU1 366 aaPredicted RBP10.27□□□□□ -0.76
CLK3-226ENST00000569406 IRAK2O43187 625 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 F12P00748 615 aaPredicted RBP10.27□□□□□ -0.76
CLK3-226ENST00000569406 NCF1P14598 390 aaPredicted RBP10.27□□□□□ -0.76
CLK3-226ENST00000569406 UBE2IP63279 158 aaKnown RBP10.27□□□□□ -0.76
CLK3-226ENST00000569406 UGT3A2Q3SY77 523 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 NCMAPQ5T1S8 102 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 TSTD2Q5T7W7 516 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 DDI2Q5TDH0 399 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 KANK2Q63ZY3 851 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 ZNF280BQ86YH2 543 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 CEP97Q8IW35 865 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 ADGRF3Q8IZF5 1079 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 OR1S1Q8NH92 325 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 SH3RF2Q8TEC5 729 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 SOCS4Q8WXH5 440 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 MAFIPQ8WZ33 124 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 C3orf30Q96M34 536 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 METTL17Q9H7H0 456 aaPredicted RBP10.27□□□□□ -0.76
CLK3-226ENST00000569406 NMRK2Q9NPI5 230 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 MRPS23Q9Y3D9 190 aaKnown RBP10.27□□□□□ -0.76
CLK3-226ENST00000569406 REV3LO60673 3130 aa10.27□□□□□ -0.76
CLK3-226ENST00000569406 A0A1W2PPE3 182 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 BBIP1A8MTZ0 92 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 TOX3O15405 576 aaPredicted RBP10.27□□□□□ -0.77
CLK3-226ENST00000569406 VPS4BO75351 444 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 HNRNPA0Q13151 305 aaKnown RBP10.27□□□□□ -0.77
CLK3-226ENST00000569406 ESRP1Q6NXG1 681 aaKnown RBP10.27□□□□□ -0.77
CLK3-226ENST00000569406 SLC30A6Q6NXT4 461 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 DEGS2Q6QHC5 323 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 WASH2PQ6VEQ5 465 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 COMTD1Q86VU5 262 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 TMEM17Q86X19 198 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 CNTN4Q8IWV2 1026 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 OR10Q1Q8NGQ4 319 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 SCARB1Q8WTV0 552 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 ROBO4Q8WZ75 1007 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 COL26A1Q96A83 441 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 CREB3L1Q96BA8 519 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 DMRTA2Q96SC8 542 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 ACTR8Q9H981 624 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 SARS2Q9NP81 518 aaKnown RBP10.27□□□□□ -0.77
CLK3-226ENST00000569406 GDE1Q9NZC3 331 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 SLAMF8Q9P0V8 285 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 ZNF490Q9ULM2 529 aaPredicted RBP10.27□□□□□ -0.77
CLK3-226ENST00000569406 PCDHA9Q9Y5H5 950 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 CDH10Q9Y6N8 788 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 CCL22O00626 93 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 SEMA7AO75326 666 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 B3GAT3O94766 335 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 VNN2O95498 520 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 ASGR1P07306 291 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 SBK2P0C263 348 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 OR4Q2P0C623 313 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 ATXN1LP0C7T5 689 aaKnown RBP10.27□□□□□ -0.77
CLK3-226ENST00000569406 SLC35E2BP0CK96 405 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 CCND3P30281 292 aaPredicted RBP10.27□□□□□ -0.77
CLK3-226ENST00000569406 CDKN2CP42773 168 aa10.27□□□□□ -0.77
CLK3-226ENST00000569406 ZNF157P51786 506 aaPredicted RBP10.27□□□□□ -0.77
CLK3-226ENST00000569406 AGFG1P52594 562 aaKnown RBP10.27□□□□□ -0.77
CLK3-226ENST00000569406 CDH4P55283 916 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms