RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 C6orf132Q5T0Z8 1188 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 PRAMEF8Q5VWM4 474 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 PRAMEF7Q5VXH5 474 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 PTCHD4Q6ZW05 846 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 OR4N5Q8IXE1 308 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 SIMC1Q8NDZ2 872 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 SERINC2Q96SA4 455 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 PINK1Q9BXM7 581 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 CPNE7Q9UBL6 633 aa19.04■□□□□ 0.64
CLN3-230ENST00000568076 CASC3O15234 703 aaKnown RBP19.03■□□□□ 0.64
CLN3-230ENST00000568076 ASNA1O43681 348 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 SOX18P35713 384 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 TGFBR1P36897 503 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 UGT2B15P54855 530 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 UBE2IP63279 158 aaKnown RBP19.03■□□□□ 0.64
CLN3-230ENST00000568076 OLR1P78380 273 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 SIM1P81133 766 aaPredicted RBP19.03■□□□□ 0.64
CLN3-230ENST00000568076 EIF2B5Q13144 721 aaKnown RBP19.03■□□□□ 0.64
CLN3-230ENST00000568076 TARDBPQ13148 414 aaKnown RBP eCLIP19.03■□□□□ 0.64
CLN3-230ENST00000568076 LRRC25Q8N386 305 aaPredicted RBP19.03■□□□□ 0.64
CLN3-230ENST00000568076 STX19Q8N4C7 294 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 SLC15A4Q8N697 577 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 FAM46DQ8NEK8 389 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 SLC38A4Q969I6 547 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 BORCS5Q969J3 196 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 FNDC11Q9BVV2 318 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 CTPS2Q9NRF8 586 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 POT1Q9NUX5 634 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 NDOR1Q9UHB4 597 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 DAPP1Q9UN19 280 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 CHST2Q9Y4C5 530 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 CORINQ9Y5Q5 1042 aa19.03■□□□□ 0.64
CLN3-230ENST00000568076 CLDN24A6NM45 220 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 PRAMEF26H0Y7S4 382 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 SLITRK5O94991 958 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 XKP51811 444 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 IRF3Q14653 427 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 SLX4IPQ5VYV7 408 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 PRSS41Q7RTY9 318 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 VRK2Q86Y07 508 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 TMEFF1Q8IYR6 380 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 COL26A1Q96A83 441 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 SLC35A4Q96G79 324 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 PRRC1Q96M27 445 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 ZFYVE21Q9BQ24 234 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 PRR14Q9BWN1 585 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 ACTRT3Q9BYD9 372 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 ROGDIQ9GZN7 287 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 POLR2J3Q9H1A7 115 aaKnown RBP19.02■□□□□ 0.64
CLN3-230ENST00000568076 DNAAF2Q9NVR5 837 aaKnown RBP19.02■□□□□ 0.64
CLN3-230ENST00000568076 NTMQ9P121 344 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 PHF11Q9UIL8 331 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 NDRG2Q9UN36 371 aaKnown RBP19.02■□□□□ 0.64
CLN3-230ENST00000568076 CYP8B1Q9UNU6 501 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 GPR55Q9Y2T6 319 aaPredicted RBP19.02■□□□□ 0.64
CLN3-230ENST00000568076 ZNF860A6NHJ4 632 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 H0YGG7 62 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 TLR4O00206 839 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 MPZL2O60487 215 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 PTHP01270 115 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 ADORA3P0DMS8 318 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 ARF3P61204 181 aaPredicted RBP19.02■□□□□ 0.64
CLN3-230ENST00000568076 C12orf73Q69YU5 71 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 FAM92BQ6ZTR7 304 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 ZER1Q7Z7L7 766 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 SLCO6A1Q86UG4 719 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 MORN4Q8NDC4 146 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 ZFPM2Q8WW38 1151 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 TOE1Q96GM8 510 aaKnown RBP19.02■□□□□ 0.64
CLN3-230ENST00000568076 TRNT1Q96Q11 434 aaKnown RBP19.02■□□□□ 0.64
CLN3-230ENST00000568076 IL4I1Q96RQ9 567 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 GIN1Q9NXP7 522 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 TAS2R16Q9NYV7 291 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 KLK4Q9Y5K2 254 aa19.02■□□□□ 0.64
CLN3-230ENST00000568076 SH3D21A4FU49 640 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 J3QRK9 145 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 B3GALT2O43825 422 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 FCMRO60667 390 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 MMP11P24347 488 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 TIGD6Q17RP2 521 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 ZNF311Q5JNZ3 666 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 KIAA0895LQ68EN5 471 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 SLC16A11Q8NCK7 471 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 OR4K5Q8NGD3 323 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 OR4K14Q8NGD5 310 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 BAHD1Q8TBE0 780 aaPredicted RBP19.01■□□□□ 0.63
CLN3-230ENST00000568076 FNDC8Q8TC99 324 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 DYNC2LI1Q8TCX1 351 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 ZNF675Q8TD23 568 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 SLC37A2Q8TED4 501 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 GAS2L1Q99501 681 aaPredicted RBP19.01■□□□□ 0.63
CLN3-230ENST00000568076 GPA33Q99795 319 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 SLC22A7Q9Y694 548 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 SLCO1B1Q9Y6L6 691 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 PMF1-BGLAPU3KQ54 211 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 C2orf74A8MZ97 194 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 H3BN98 237 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 TOR1BO14657 336 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 FRS3O43559 492 aa19.01■□□□□ 0.63
CLN3-230ENST00000568076 IGLV3-19P01714 112 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms