RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	KLHL28	Q9NXS3	571 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	PSD3	Q9NYI0	1048 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	NUDT4	Q9NZJ9	180 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	CLCF1	Q9UBD9	225 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	MAPRE3	Q9UPY8	281 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	ANGPTL3	Q9Y5C1	460 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	JMJD1C	Q15652	2540 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689		A0A1W2PS29	197 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	DEFB108A	A8MXU0	73 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689		E7ESA3	106 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	UBXN8	O00124	270 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	PLOD2	O00469	737 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	SIAH2	O43255	324 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	TNFSF13	O75888	250 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	SMNDC1	O75940	238 aa	Known RBP eCLIP	11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	SEC31A	O94979	1220 aa	Known RBP	11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	PTGDS	P41222	190 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	STAR	P49675	285 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	XK	P51811	444 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	DR1	Q01658	176 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	DESI1	Q6ICB0	168 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	ZNF572	Q7Z3I7	529 aa	Predicted RBP	11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	IFNE	Q86WN2	208 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	GRAMD2A	Q8IUY3	354 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	KLHL7	Q8IXQ5	586 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	ZBED8	Q8IZ13	594 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	SPATA4	Q8NEY3	305 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	RDH11	Q8TC12	318 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	PYROXD1	Q8WU10	500 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	UBTD2	Q8WUN7	234 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	HGD	Q93099	445 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	NODAL	Q96S42	347 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	RBBP8	Q99708	897 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	MED18	Q9BUE0	208 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	G6PC3	Q9BUM1	346 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	OSBPL11	Q9BXB4	747 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	OR2B2	Q9GZK3	357 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	RAB17	Q9H0T7	212 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	NXF5	Q9H1B4	397 aa	Known RBP	11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	L2HGDH	Q9H9P8	463 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	GALNT9	Q9HCQ5	603 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	TAS2R10	Q9NYW0	307 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	KLRF1	Q9NZS2	232 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	TRPS1	Q9UHF7	1281 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	CFL2	Q9Y281	166 aa		11.49	□□□□□ -0.57
SHMT2-223	ENST00000556689	FBN1	P35555	2871 aa	Known RBP	11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689		A0A1W2PNV4	684 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689		H0YIV9	168 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	FOXE1	O00358	373 aa	Predicted RBP	11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	TP73	O15350	636 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	KERA	O60938	352 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	CNOT4	O95628	575 aa	Known RBP	11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	GBA	P04062	536 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	CRH	P06850	196 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	POR	P16435	677 aa	Predicted RBP	11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	S1PR1	P21453	382 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	GPX3	P22352	226 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	CRYGS	P22914	178 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	SSTR1	P30872	391 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	GP5	P40197	560 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	LHX2	P50458	406 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	GFRA1	P56159	465 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	C2orf54	Q08AI8	447 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	CBLB	Q13191	982 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	ZKSCAN8	Q15776	578 aa	Predicted RBP	11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	CPSF6	Q16630	551 aa	Known RBP eCLIP	11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	C20orf204	Q6ZNR8	217 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	RAPH1	Q70E73	1250 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	CHMP1B	Q7LBR1	199 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	P4HA3	Q7Z4N8	544 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	WDSUB1	Q8N9V3	476 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	CTHRC1	Q96CG8	243 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	STARD4	Q96DR4	205 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	OMA1	Q96E52	524 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	LCOR	Q96JN0	433 aa	Predicted RBP	11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	FAM111A	Q96PZ2	611 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	ATOH8	Q96SQ7	321 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	TRIM31	Q9BZY9	425 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	BCAP29	Q9UHQ4	241 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	ADAM21	Q9UKJ8	722 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	DLGAP4	Q9Y2H0	992 aa		11.48	□□□□□ -0.57
SHMT2-223	ENST00000556689	EFCAB8	A8MWE9	144 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	ACOX3	O15254	700 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	UGDH	O60701	494 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	UGT2B11	O75310	529 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	TGM6	O95932	706 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	CPM	P14384	443 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	SPR	P35270	261 aa	Predicted RBP	11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	GMPR	P36959	345 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	CD79B	P40259	229 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	NEK2	P51955	445 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	MAP4K2	Q12851	820 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	DLG1	Q12959	904 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	NNAT	Q16517	81 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	GLE1	Q53GS7	698 aa	Known RBP	11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	OR2A2	Q6IF42	318 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	CYS1	Q717R9	158 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	TBC1D1	Q86TI0	1168 aa	Predicted RBP	11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	NUDT13	Q86X67	352 aa		11.47	□□□□□ -0.57

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